BAC Information

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BAC

Clone NameMSMg01-460G20
Chromosome8 (Build37)
Map Location 104,679,512 - 104,679,880
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460G20.T7 (MSMg01no460_g20.b1)MSMg01-460G20.TJ (MSMg01no460_g20.g1)
ACCAG545787AG545788
length725727
length of high quality
(start - end)		458 (61 - 518)422 (70 - 491)
definitionCHROMAT_FILE: MSMg01no460_g20.b1 PHD_FILE: MSMg01no460_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:40 2005CHROMAT_FILE: MSMg01no460_g20.g1 PHD_FILE: MSMg01no460_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTATCTGTCTTAGGTGGGGCTATTTCTGACTCTTTTGCCTTTGCTTGGCA
CCCTGTTCTTCTCCTGGCTTGCTTCTTCCATCTTTGTTGTGAAAATAAGA
GCCAGGTCTTATTTTAGGTTGTAATATCATATTTGGTCAATGTTCCTGAA
AGGCCTGTTCCTTTCTGAGAGGAAATGAAGGGGTAGTATGGATAAAGAAC
TGGGAAAGGGGAAAACATTTGAAATGTAAATACATAAAATATCAAATAAA
TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA
AAATGAACTTTCCAGATATTAGGGAAGGCAGAATTAAAGAGAATTATCTC
ATAGGAAGAAGAAAAGAAAAAGAGAAGAAAAGAGAAAATGTGCTGTGCTT
ACATAATGAAATACTACTCAGCTACTAAAATCAATGACACCATGAAATAT
GCAGGCAGATGGATGGGACTAGAAAAGATCATCCTGAGTGAAGTAACACG
GATCCAGAAAGATAAACCTCATATGCACTCACTTATAGGTGGATATTAGT
CACCAAATATATGACAACCATGCTATAATCCATAGACCCAAAGAAGCTTA
ATTAACAAAATTGCCCCAAATCTTTTTTAAACCACCACCCTTGTAATTGA
ACCATTTAAACAGCTAAAGTTTTAA

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTACACATGCATTTTTATCAGTCTACATTCA
CAGTAGTTGAGATGTGAATTAGCCTAACTGTCCATCTACAGATAAAGGAA
AAGACAGTGTTGTGCCTATGACATAATTGATTGTTACTTTCCATTATATG
TGAAATTATGTCACTTGCAGAAAAATGGATGACATTGGAGATTATCATGT
TGAGTTAAAGCAATCTGGTCATAGAAAGAAAGAAACAAGGTTTTTATATG
CAATTTCTAGATTAAAATTATAATTATGAGAATATTTAGGACAATTTGGA
TGAGGTACCTTATGAGAGAGGGAAAAAGGGGGGTAAGAAAGGATGGTGAG
ATGAATTTGATCAAAATACGGAAAAGGGGTGTATGAAAAATAACATATTA
AACTCAGCTTTCCACAATTTACATGCAGAAAATCTCCTAAGAACAAATGT
TATTTCCCTTTAAATTGTTCAGAAAGTACTCAAAAGCCAATAAACCATTA
TAAGCAATATTGTAGTAAAGAGTAACCTGGACTCCTTTAACCATACTTTG
CATTGGGGACATTGTAAAATGAACCATTTGCTCCCCCCTCTTTTGAGTTA
ATTTTTTCTCCCCTTAAAAAACCGGCTGCCTCGTTTTGGTTTCCCTTTTT
TGACTATTTGTATGCTTTTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_g20.g1 MSMg01no460_g20.g1 CHROMAT_FILE:
MSMg01no460_g20.g1 PHD_FILE: MSMg01no460_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:40 2005
         (422 letters)



>mm_chr8_104679059_104679880
          Length = 822

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 54  cctaactgtccatctacagataaaggaaaagacagtgttgtgcctatgacataattgatt 113
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 822 cctaactgtccatctacagataaaggaaaagacagtgttgtgcctattacataattgatt 763

                                                                       
Query: 114 gttactttccattatatgtgaaattatgtcacttgcagaaaaatggatgacattggagat 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gttactttccattatatgtgaaattatgtcacttgcagaaaaatggatgacattggagat 703

                                                                       
Query: 174 tatcatgttgagttaaagcaatctggtcatagaaagaaagaaacaaggtttttatatgca 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tatcatgttgagttaaagcaatctggtcatagaaagaaagaaacaaggtttttatatgca 643

                                                                       
Query: 234 atttctagattaaaattataattatgagaatatttaggacaatttggatgaggtacctta 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atttctagattaaaattataattatgagaatatttaggacaatttggatgaggtacctta 583

                                                                       
Query: 294 tgagagagggaaaaaggggggtaagaaaggatggtgagatgaatttgatcaaaatacgga 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgagagagggaaaaaggggggtaagaaaggatggtgagatgaatttgatcaaaatacgga 523

                                                                       
Query: 354 aaaggggtgtatgaaaaataacatattaaactcagctttccacaatttacatgcagaaaa 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aaaggggtgtatgaaaaataacatattaaactcagctttccacaatttacatgcagaaaa 463

                    
Query: 414 tctcctaag 422
           |||||||||
Sbjct: 462 tctcctaag 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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