Query= MSMg01no460_h07.b1 MSMg01no460_h07.b1 CHROMAT_FILE:
MSMg01no460_h07.b1 PHD_FILE: MSMg01no460_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:42 2005
(572 letters)
>mm_chr8_44966529_44967500
Length = 972
Score = 1040 bits (538), Expect = 0.0
Identities = 564/578 (97%), Gaps = 12/578 (2%)
Strand = Plus / Plus
Query: 1 cagtttcccatgaatgagaaaatgctatgtatacacatgctatgttcaattaagccattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtttcccatgaatgagaaaatgctatgtatacacatgctatgttcaattaagccattc 260
Query: 61 actctaaatcattggttcttaacctctgggtcatgacccacttaggggtcatatatcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actctaaatcattggttcttaacctctgggtcatgacccacttaggggtcatatatcaga 320
Query: 121 caccctatgtttcagatatttacattatgattcataagag-tagccatattatagttatg 179
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 321 caccctatgtatcagatatttacattatgattcataag-gatagccatattatagttatg 379
Query: 180 aagtagcaacaaaataactttatgcttggagatcacaacaacatgaggaactctacta-- 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagtagcaacaaaataactttatgcttggagatcacaacaacatgaggaactctactaaa 439
Query: 238 ---ttttttgaggtattaggaaggtttgaggaccactgctctagacagaagtcctagtta 294
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcct-----gaggtattaggaaggtttgaggaccactgctctagacagaagtcctagtta 494
Query: 295 aggacaaaaactttgcttcggagacagtatttgcaaagatccttcctgctaactttagtc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aggacaaaaactttgcttcggagacagtatttgcaaagatccttcctgctaactttagtc 554
Query: 355 aatgatagtcaagaactacaagtttcccttatcttttaatatgatttttaaaacttagta 414
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 555 aatgatagtcaagaactacaagtttcccttatcttttaatatgattttaaaaacttagta 614
Query: 415 tttagaactattaatattataaattctaaaatatggaaacagtttaaagtatttcaaaga 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tttagaactattaatattataaattctaaaatatggaaacagtttaaagtatttcaaaga 674
Query: 475 gctcttgaggacactcttatgcagtggtagctgctatgagcttgtcttagccagtcacat 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gctcttgaggacactcttatgcagtggtagctgctatgagcttgtcttagccagtcacat 734
Query: 535 ctaacatacatggtactattcttactgcttcagtttca 572
||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctaacatacatggtactattcttactgcttcagtttca 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_h07.g1 MSMg01no460_h07.g1 CHROMAT_FILE:
MSMg01no460_h07.g1 PHD_FILE: MSMg01no460_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:42 2005
(512 letters)
>mm_chr8_45105809_45106720
Length = 912
Score = 897 bits (464), Expect = 0.0
Identities = 496/512 (96%), Gaps = 10/512 (1%)
Strand = Plus / Minus
Query: 1 ttttacatgcagacatccaatttgaagagcatgatttgttgaaaaagctgcccttttagt 60
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 780 ttttacatgcagacatccaatttgactagcacgatttgttgaaaaagctgccctttta-- 723
Query: 61 gtgtgtgtttttttttaatttttttcatttcctttggattcacaataccagtggatctgt 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 --gtgtgttttt------tttttttcatttcctttggattcacaataccagtggatctgt 671
Query: 121 tggatcacattttaactcagtttaaaagttttccagcatcttccatttcaatgactctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tggatcacattttaactcagtttaaaagttttccagcatcttccatttcaatgactctca 611
Query: 181 tgactctgcagcctagaaactcggcctgtctactatgtatagcacaaagcagagtaggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tgactctgcagcctagaaactcggcctgtctactatgtatagcacaaagcagagtaggat 551
Query: 241 tatttcatctcagtgggatgtgtctgtatgggagcggtctccgattacagtcatctgtga 300
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tatttcaactcagtgggatgtctctgtatgggagcggtctccgattacagtcatctgtga 491
Query: 301 gcaggttgatagtttctacatacgctggtttcagccaaaggttagttgttggcaaatagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gcaggttgatagtttctacatacgctggtttcagccaaaggttagttgttggcaaatagc 431
Query: 361 catagtcctactgatataaggtctcgccattcatctgagcattatctactcagtaggtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 catagtcctactgatataaggtctcgccattcatctgagcattatctactcagtaggtgt 371
Query: 421 gaagcactggggcccttgccatgcccatgcttatgcccataatatccattaactcaagac 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 370 gaagcactggggcccttgccatgcccatgcttatgcccataatacccattaactcaagac 311
Query: 481 ttcatctgtccccacatttaatattttatatg 512
||||||||||||||||||||||||||||||||
Sbjct: 310 ttcatctgtccccacatttaatattttatatg 279
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
