BAC Information

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BAC

Clone NameMSMg01-461E16
Chromosome8 (Build37)
Map Location 4,220,153 - 4,220,525
singlet/doubletsinglet
Overlap genenone
Upstream geneInsr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157
Downstream geneLrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461E16.T7 (MSMg01no461_e16.b1)MSMg01-461E16.TJ (MSMg01no461_e16.g1)
ACCAG546449AG546450
length744754
length of high quality
(start - end)
249 (320 - 568)357 (72 - 428)
definitionCHROMAT_FILE: MSMg01no461_e16.b1 PHD_FILE: MSMg01no461_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:50 2005CHROMAT_FILE: MSMg01no461_e16.g1 PHD_FILE: MSMg01no461_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAATGCGCGGAATTCC
CATTTGTTGCCAGACTATTCCATTAAGACGTATTTTAGCACCTGGTGAAG
AAGAGAATTTGGAATTCGAAGAAGATGAAGAAGGTGGTGCTGGAGCAGGA
CCTCCTGATTCTTTCTCTGCTAGAGTTCCTGGTACTTTATTGCCACGGTT
GCCATCGGAACCAGGGATGACGTTACTCACCATCAGGATTGATAATATTG
GTTTGAAAGATGCGGGGCAGTGCATCGATCCCTACATCACAGTCAGCGTG
AAAGATTTGAAGGTCATATATTTAACTCCCGTACAAGACACTCCTGTGGC
TTCAAGAAAAGAAGATACTTACGTTCACTTTAATGTGGACATTGAGCTCC
AGAAACACGTTGAAAAGTTAACCAAAGGTGCGGCCATTTTCTTTGAATTC
AAACATTACAAGCCTAAAAAGAGGTTTACCAGCACTAAGTGTTTTGCCTT
CATGGAGATGGATGAAATTAAACCTGGGCCAATCGTAATAGAACTATACA
AGAAACCCACTGACTTTAAAAGAAAGAAATTGCAATTTGTTGACCAAGAA
TCCACTTTATCTTCATCTACATCAAAGCTTGCACTAAGATTGATCCTGAT
TCAAATAACCAAGAACTTGTGTGAATTTTACCACTCATAACCCCATCATA
TCTCTGTGTATTCATAATCACCCCTTCTACATGTTATTAAGCGG
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGCAGGGAGGAATTACTCACCCGTGTG
CGCACAAGTTTGCCATGTGTGTGTATGTGTATAAGCTGGAGTGACAGGCC
GCAGGGTGCTATGCTAGTTCTGGGCTATGATGGTGGGGAGTGGCTCTGGA
TCATCAAGGCAGAAAGTACCACTGGACAGATGATACTCAGCCAACAGATG
TGACACAAAAAAAGGAAGCTCATCAGAATTCCGTGTAAATAAGCTACCAC
CCCATGAAAAGTACTCTTTTTAATGGAAGCCTGATGAAGGGAAAGAGAAA
TGAGGAAGACAAACAGTTAAGAGTTTTGAGCCAAACCAACAAAAGACGTC
TTCCTGAATGTTAAAGCCTTGATTTAAGGCCTGGAAAATGGCTCAGTGGC
CAAAGGTGCTGCATGGCAAGTCTGGATATCAAAGTTTGATCCCTGAGACC
CACATTAAGGTAGAACAAGAGAACCACTCCTCTTAGGTGGTCTCTGTCGC
CTGTCTTCTATCTGCGGTATGTGCTACCCTCCCCCCCTTCCCATTAATCA
CTATTTATCTATTTAAACCTCTTTTTCACTTAATGTCTGATTTTATCCTT
CTCCTGTTCCTAAACCTGCGTTAACCCTTTTGACCTCCTGGCTTTCTACC
CGACCCTTTTTTCTTACCCTTTTCGCTGTTCGTCTTACTATTTCTCCTCT
CCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_e16.g1 MSMg01no461_e16.g1 CHROMAT_FILE:
MSMg01no461_e16.g1 PHD_FILE: MSMg01no461_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:50 2005
         (357 letters)



>mm_chr8_4220144_4220900
          Length = 757

 Score =  640 bits (331), Expect = 0.0
 Identities = 355/373 (95%), Gaps = 16/373 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcagggaggaattactcacccgtgtgcgcacaagtttgccatgtgtgtgtatgtgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caggcagggaggaattactcacccgtgtgcgcacaagtttgccatgtgtgtgtatgtgta 323

                                                                       
Query: 61  taagctggagtgacaggccgcagggtgctatgctagttctgggctatgatggtggggagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taagctggagtgacaggccgcagggtgctatgctagttctgggctatgatggtggggagt 263

                                                                       
Query: 121 ggctctggatcatcaaggcagaaagtaccactggacagatgatactcagccaacagatg- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 262 ggctctggatcatcaaggcagaaagtaccactggacagatgatactcagccaacagatgt 203

                                                                       
Query: 180 ---------------tgacacaaaaaaaggaagctcatcagaattccgtgtaaataagct 224
                          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gataatactgaaccctgacacaaaaaaaggaagctcatcagaattccgtgtaaataagct 143

                                                                       
Query: 225 accaccccatgaaaagtactctttttaatggaagcctgatgaagggaaagagaaatgagg 284
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 142 accaccccatgaaaagtactcaatttaatggaagcctgatgaagggaaagagaaatgagg 83

                                                                       
Query: 285 aagacaaacagttaagagttttgagccaaaccaacaaaagacgtcttcctgaatgttaaa 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  aagacaaacagttaagagttttgagccaaaccaacaaaagacgtcttcctgaatgttaaa 23

                        
Query: 345 gccttgatttaag 357
           |||||||||||||
Sbjct: 22  gccttgatttaag 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)