BAC Information

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BAC

Clone NameMSMg01-461H22
Chromosome8 (Build37)
Map Location 101,865,630 - 101,865,864
singlet/doubletsinglet
Overlap geneCdh8
Upstream genenone
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461H22.T7 (MSMg01no461_h22.b1)MSMg01-461H22.TJ (MSMg01no461_h22.g1)
ACCAG546604AG546605
length750755
length of high quality
(start - end)
243 (75 - 317)316 (73 - 388)
definitionCHROMAT_FILE: MSMg01no461_h22.b1 PHD_FILE: MSMg01no461_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:07 2005CHROMAT_FILE: MSMg01no461_h22.g1 PHD_FILE: MSMg01no461_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCGACGTGGGCGGAA
TTCCTTAGNATAGCAATAACAGGAAAGCTCCAAGAAAATCAGAGCAAAGC
TCTTTACTTCTCTTGTCTGTCCTTATATGTTATTCCCTGCAACAAAGATG
AAATATATTTCATTTTTTATTCTTCTTTCATACATTATGTTCCAACGACA
GTTTCCAATTGTTCCATTCTTCCCATTATCTCCCACAATCCTTCTTCTCT
TTATTTACACTCTCTGTTTCACTTTAATCAATCATTCAATCAATCAATAA
ATCAATCAATCAATCTANCTAATATCAGGGATATCAACTGAACATGGCAT
AACGAGTATATAATATGACCATGTACATACCCTTATATCAAGGTTGGGCA
AGTCAACTCAGTAGGAGACAAATGATCCTAAATTCAGACAAAAGGGTCAG
AAATACCCCCTAATCCCACTGTTACTTGCCCCATAAGAAAATCCACCTAC
CCTTCCCTAAAAATTATGGAAAAATTTCCAGGGCCAAAACCATAAAAGGG
CCCCGGGTTTTTTTGGTTCCCCCCTAAAGAAACCCCAAAAACCCCCGCTT
TGAAGAAATTCTGGGAAAAAAGCCCTTTTTGGGGGTGCCCCCGTGGGGGG
GCCCCCTTTTTTTTTTTGGTCCCCAAAAAAAGGCCCCCCCTCCTTTGGAA
ATTTTTTTTGAGAACCCCCACATAAGTGTTGGGGGGCGGGGGTTTTTATG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATTGTGATAATGGATTCAGTTTTTTCA
TGTAGGGTCATTCATAGAAACTAAGCAAACTATAAGAACTAAGTTTGGGA
CAAGTCCCTTCCACTCGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTC
TTGCCCAAAACCCGCAAGGGCCCACACGGGACTCCCCACGGGATCCTAAG
ACCTCTGGTGAGTGGAACATAGCGCCTGCCCCAATCCAATCGCGTGGAAC
CTGAGACTGCGGTACATATGGAAGCAGGCTACCCAGGCTTGATCTGGGGC
ACAAACCCCTTCCGCTCCACTTGAGCCCCAGGCAACCTTGCCAGCGGAGT
CGCCTGACACCCGCAAGGGCCCACACAGGATTCCACATGAGATCCTAAAG
ACCTCTAGTGAGTGGAGCACAACTTCCTGCCAGGAGTCTGGTTCCGACCC
AGATATTCTGGGTACCTGGCCCTGGAAAAAAAAAAATTGGCCTGGCAAAA
AAAAACTCCGCCCCCTGAAAAATTAAGGGAAATGGTTAAACCCCCCGGTT
TGGGTTTAAAAAGGGATAAAAAAAACCCCCCGGAAAAAACAACTCCTTTA
AAACGGGGACACCTATAAACCGCGTGGTTTTCCAAAAAATAACAAAAAAG
GGGTGTAGCGGGTCCCTCTATAAAAACCTCCTCTCTCATAAAAAGTTTTC
ACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_h22.b1 MSMg01no461_h22.b1 CHROMAT_FILE:
MSMg01no461_h22.b1 PHD_FILE: MSMg01no461_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:07 2005
         (243 letters)



>mm_chr8_101865430_101866072
          Length = 643

 Score =  400 bits (207), Expect = e-116
 Identities = 228/235 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagctccaagaaaatcagagcaaagctctttacttctcttgtctgtccttatatgttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 aagctccaagaaaatcagagcaaagctctttacttctcttgtctgtgtttatatgttatt 260

                                                                       
Query: 61  ccctgcaacaaagatgaaatatatttcattttttattcttctttcatacattatgttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctgcaacaaagatgaaatatatttcattttttattcttctttcatacattatgttcca 320

                                                                       
Query: 121 acgacagtttccaattgttccattcttcccattatctcccacaatccttcttctctttat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 321 acgacagtttccaattgttccattcttcccattatctcccacaatccttcttctccagat 380

                                                                  
Query: 181 ttacactctctgtttcactttaatcaatcattcaatcaatcaataaatcaatcaa 235
           |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 381 ttacactctctgtttcactttaatcaatcaatcaatcaatcaatcaatcaatcaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)