BAC Information

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BAC

Clone NameMSMg01-461L15
Chromosome8 (Build37)
Map Location 99,989,086 - 99,989,629
singlet/doubletsinglet
Overlap geneLOC546090
Upstream geneLOC333331
Downstream geneLOC636859, EG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461L15.T7 (MSMg01no461_l15.b1)MSMg01-461L15.TJ (MSMg01no461_l15.g1)
ACCAG546782AG546783
length736749
length of high quality
(start - end)
544 (70 - 613)472 (74 - 545)
definitionCHROMAT_FILE: MSMg01no461_l15.b1 PHD_FILE: MSMg01no461_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:26 2005CHROMAT_FILE: MSMg01no461_l15.g1 PHD_FILE: MSMg01no461_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCTTGCCATTTCCTTATGACAATTAATTAAATCGTCATCCTTTAGCTA
TTATTATAAGAATGTATTTTGGATCTTTTACATATCAGTATTCCAGAGTC
ATAGAAGCTGCTGTTTTTATCATCTTGTGTTTTCTGTTTATCTCTGAATT
ACTGTGGTCCTCAAGTTTCCCTAGCATCAAATAATCACTATGAAATATAA
AATGAATCGACTTACTTGGATCTGAATGGTAAATTTAAAGCAAGCTTCTA
GGAACACGATATTTCATCTTTTACATCAAACACACATTTTTCTTGCAATT
CTCAGCATAGAATATGAGAGCTAAGAGGATAAATGCTGCTCAAAGTGTTG
TTCTAGTCAGGTATTAAAGAAAGAAAAGGTTAACAATTTTCTTACTGTTG
GCTCCAAAACTATCACAGAATTTTCTATCCTTTCTTGTCATCTCTTTTGG
TATATCATGGGATAAATCACTTGGACATGAATGGATTACAAATTACACAT
ATATTGGCCTACTCCATGGTAACAATTTATGATGACTATGATTCTTTAAG
AAACAATCTACTTAAGGAGGCAGGATTTCTTTGTTCTGCAAAGTATGAGA
TAAATTGGAATTTTGATAAACATGTACAAAAAGATGGGAAACTGTAACCA
ATTTCTTTTTTCCGGATCAAAATTGTGACCTTGTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGAATACATAAAATACTCA
AACTTATGGGACACAAGAAAGTTGGTTCTAAAAGGCAAGTTTACAGCACT
AAATGCCAAATTTGAAAAGACAAATATGGAATGTATTCACTTATATGTGG
ATATTAGCTCTTAAATCAAGGATAACTAAACTACAATCTGTAGAACCACA
GAGGTTAGGAACAGAATAAGGGAGTAGCAGGAACAGATAGATCTTGTTAG
TAAAGAGAAAGAGAATGGATCATTATGGAGGAATGAGGACATGCTGGAAC
AGGAAGATCAACTTGTGAAGGGGAGAGGTAGAAAGAGGGAATACAGGACC
TAATACAGTAGAAACCTCCTGAAGTATTTAAAGTGATCTAAATGAAATCA
CCAAATAATAAAGTAGACAAGAGTCCCAACTTGACATCTCTAGTCACCAA
AAAAACCTTCCATTCATCAGATTGGGCTACATCTCATTGATTTATTGGCC
AAACAACATGGGAAACAAACTAACAAACAAACCAACAAAAATAAAACAGG
CTTTTGCCAAGAAAATAAACTGCTCTCCACAAAGGGACCCCCTAGCCCAT
GTACTGAAGACAGCACCTACACAACTCATTGAATAATGAAAAATCATGCT
GATACCCACCTTTCCCCCTGTACCTTTTATGTTCCCGGGGCTTCTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_l15.b1 MSMg01no461_l15.b1 CHROMAT_FILE:
MSMg01no461_l15.b1 PHD_FILE: MSMg01no461_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:26 2005
         (544 letters)



>mm_chr8_99988886_99989829
          Length = 944

 Score = 1013 bits (524), Expect = 0.0
 Identities = 539/548 (98%), Gaps = 8/548 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacaattaattaaatcgtcatcctttagctattattataagaatgtattttggatctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacaattaattaaatcgtcatcctttagctattattataagaatgtattttggatctttt 260

                                                                       
Query: 61  acatatcagtattccagagtcatagaagctgctgtttttatcatcttgtgttttctgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatatcagtattccagagtcatagaagctgctgtttttatcatcttgtgttttctgttt 320

                                                                       
Query: 121 atctctgaattactgtggtcctcaagtttccctagcatcaaataatcactatgaaatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctctgaattactgtggtcctcaagtttccctagcatcaaataatcactatgaaatata 380

                                                                       
Query: 181 aaatgaatcgacttacttggatctgaatggtaaatttaaagcaagcttctaggaacacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgaatcgacttacttggatctgaatggtaaatttaaagcaagcttctaggaacacga 440

                                                                       
Query: 241 tatttcatctttta----catcaaacacacatttttcttgcaattctcagcatagaatat 296
           ||||||| |    |    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttcacc----aaggacatcaaacacacatttttcttgcaattctcagcatagaatat 496

                                                                       
Query: 297 gagagctaagaggataaatgctgctcaaagtgttgttctagtcaggtattaaagaaagaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gagagctaagaggataaatgctgctcaaagtgttgttctagtcaggtattaaagaaagaa 556

                                                                       
Query: 357 aaggttaacaattttcttactgttggctccaaaactatcacagaattttctatcctttct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaggttaacaattttcttactgttggctccaaaactatcacagaattttctatcctttct 616

                                                                       
Query: 417 tgtcatctcttttggtatatcatgggataaatcacttggacatgaatggattacaaatta 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgtcatctcttttggtatatcatgggataaatcacttggacatgaatggattacaaatta 676

                                                                       
Query: 477 cacatatattggcctactccatggtaacaatttatgatgactatgattctttaagaaaca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cacatatattggcctactccatggtaacaatttatgatgactatgattctttaagaaaca 736

                   
Query: 537 atctactt 544
           ||||||||
Sbjct: 737 atctactt 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)