Query= MSMg01no462_a17.b1 MSMg01no462_a17.b1 CHROMAT_FILE:
MSMg01no462_a17.b1 PHD_FILE: MSMg01no462_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:53 2005
(605 letters)
>mm_chr8_66410997_66412001
Length = 1005
Score = 1100 bits (569), Expect = 0.0
Identities = 592/603 (98%), Gaps = 8/603 (1%)
Strand = Plus / Plus
Query: 5 gaattcattatacttttc--ca--ggagtatcttttcaatagcagaaaaagaaaacctac 60
|||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattatact----aacaaaggagtatcttttcaatagcagaaaaagaaaacctac 260
Query: 61 atgattaattcaatagctattcagcaagaaactctcagcaatgagttttttacctttctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 atgattaattcaatagctattcagcaagaaactctcagcaatgagtttttgacctttctt 320
Query: 121 tttctgagacagtcttattgtgcagaccgactgcccttgactctctataaatgacacttt 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tttctgagacagtcttattgtgcagaccgactgcccttgactctatataaatgacacttt 380
Query: 181 agatgactgaaaaatagaaatggaaggattctttaaagaaaaggtaaaaacctgaccaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgactgaaaaatagaaatggaaggattctttaaagaaaaggtaaaaacctgaccaag 440
Query: 241 aaataagagatctgaatgtctaaattttagcaagagaaatggaatgttatgaaaaaggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataagagatctgaatgtctaaattttagcaagagaaatggaatgttatgaaaaaggtt 500
Query: 301 ttgatcagaaaaaaacaaaacaaaacaaaaacaaataaacaaaaactataggctttgggc 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ttgatcagaaaaaaacaaaacaaaacaaaaacaaacaaacaaaaactataggctttgggc 560
Query: 361 cagtgagaaagtctattgggtaaaagtggttgccatacaagtctggggacctggatttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgagaaagtctattgggtaaaagtggttgccatacaagtctggggacctggatttga 620
Query: 421 tccctagaacccacagtggaagggaaaaaaatgaccattaaacgttgtcctctgacctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccctagaacccacagtggaagggaaaaaaatgaccattaaacgttgtcctctgacctct 680
Query: 481 tacacattctgaggcacatctatactcacactcacccaccatatacatgcacatatacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacacattctgaggcacatctatactcacactcacccaccatatacatgcacatatacac 740
Query: 541 aataataaagaatgaaggaatgaaaacaaactgtgggcttagataacttctcctaagctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aataataaagaatgaaggaatgaaaacaaactgtgggcttagataacttctcctaagctt 800
Query: 601 tta 603
|||
Sbjct: 801 tta 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_a17.g1 MSMg01no462_a17.g1 CHROMAT_FILE:
MSMg01no462_a17.g1 PHD_FILE: MSMg01no462_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:53 2005
(605 letters)
>mm_chr8_66521461_66522465
Length = 1005
Score = 1108 bits (573), Expect = 0.0
Identities = 582/585 (99%)
Strand = Plus / Minus
Query: 1 aggtgttctacattctccttaaggaacatttctctgaattaaacagaaacaaactgtcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aggtgttctacattctccttaaggaacatttctctgaattaaacagaaacaaactgtcag 526
Query: 61 gaaaaactctcacatcacatatttcctcataactcaaagagtgtctaaatatgaaaagca 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 525 gaaaaactctcacatcacatatttcctcataactcaaagagtgtctaaatctgaaaagca 466
Query: 121 ttctgatatacctaatacaatttatttaggttccagttagttgaatacttgtataagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttctgatatacctaatacaatttatttaggttccagttagttgaatacttgtataagatg 406
Query: 181 aaaatatatttgaattaactttgagttatctcaaatcatgcaactgaatatgcatgctac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aaaatatatttgaattaactttgagttatctcaaatcatgcaactgaatatgcatgctat 346
Query: 241 tctatttgttgatagttattttcatcaaggcttagtcagaaaattttattcttaaatctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tctatttgttgatagttattttcatcaaggcttagtcagaaaattttattcttaaatctc 286
Query: 301 aaaaattgttgtttcatgatgaaattctaatcaagaacataatatatgcagttatttcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaaaattgttgtttcatgatgaaattctaatcaagaacataatatatgcagttatttcta 226
Query: 361 tacacttagcaataacaattatgagaaaatttaatatttattaataaaataagttctact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tacacttagcaataacaattatgagaaaatttaatatttattaataaaataagttctact 166
Query: 421 acttattctatattactcagaaagaaagctatttaaaaatttagttttcttgcaagaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 acttattctatattactcagaaagaaagctatttaaaaatttagttttcttgcaagaagt 106
Query: 481 gagccatcaggaataaagacaaacaaatttatatatacatatatattcatagtattattt 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gagccaccaggaataaagacaaacaaatttatatatacatatatattcatagtattattt 46
Query: 541 ctgatatacctaataaaaaaatcacacatactctgtttttttcag 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ctgatatacctaataaaaaaatcacacatactctgtttttttcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
