BAC Information

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BAC

Clone NameMSMg01-462O06
Chromosome8 (Build37)
Map Location 49,257,257 - 49,257,502
singlet/doubletsinglet
Overlap genenone
Upstream geneStox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream geneOdz3, 2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462O06.T7 (MSMg01no462_o06.b1)MSMg01-462O06.TJ (MSMg01no462_o06.g1)
ACCAG547671AG547672
length790765
length of high quality
(start - end)
379 (43 - 421)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no462_o06.b1 PHD_FILE: MSMg01no462_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:03 2005CHROMAT_FILE: MSMg01no462_o06.g1 PHD_FILE: MSMg01no462_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGA
ATTCCTTCTTTATGCCCTCTACCATCATCATGAGATATGCTTTTAAATCC
AGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGG
CGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGAT
TCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATA
GTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATC
AGCAGGCGTGGGAGACTTTCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCA
GTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTATCTGG
TGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTC
CCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGTCCAGTTGTCTGTAGTCG
AAGATGTCGCAGCCCTCTAATTTCTGTGGCTCTTGCCGTTAACTTGTCTG
TCTTGCCTGTGCTTTGAGTTTGGTGCTTCTCCTATATTCTTCTGTTATTT
CTCTTCCTGTCTCCCCATTTTCTTGGATTTCCGTTTTCCTCATTGTTCTT
TTTTTTTCTCTTTGTTCTTCTCCTTTTTCTCTCCTGATTTTTATTCTTTT
TCCCTCCTTTTTCCTTCTTCCTTTCTTTCCTCTTAGTTCGTCTATCTCAC
TCCTCCCGTCTCTTCTTCTTTTTATTTTCTCTTTTTTATC
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATAGCCAGTGGGGCAGCAGTATTGA
CAGAGAGTCACTGTGCCCAGGATGAACTGGGCAGGACACAGTAGCACCAG
GGAGCAGCCCTTGGGCTGGACACACACAGCGAGGTCAGGCTCAGTGACAG
GGCATCATGGGGAGCTTTGCTTTCTGAATTCTAAGAGCAAGGAGGTGAAA
CAGCAGCAAATCAAAAGCAGGAATGGGCAAAGGCCACAAAGGAGTTGGGT
GTTGTCTGACTAGGAAAAGGATCAGTGGAACGCAGTCTTACTCTCAAGCA
CACAGCAGCCATAAGAGGGGCCTCTGTACATCCGTAGAGGGTGCAGGCAT
GGAAGCCAGCTCAGATACCTGATTGAACTATGACTGTGCAGGCCACCTCC
CTGAAGACTGTCAAAGGTTTAATTAATAACACTTTCTACCGAGAGGTTAG
GCCATGGGCTAGCCCCAGGCTAGAGCTGGAGCTGGCCAGCGTAGTGCTTG
ACAATCAATATTTTGAGTCATGACCAGGATCTCACACGAAGCAGGATACT
TCTCCATGCTCGGGGCGTCTTACTATGTAGAAAGTGCACGTGTCATCCGT
CCCTGGCCTCTTCCACCCCATTGTTCTTTGTAGATAGACTCAGGGCCCCT
TTTTTTCGTTCTTGTTCTCTAGATACTTCTTTTTTATATTTTTTTCCACC
GTTCATTGGCATGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_o06.g1 MSMg01no462_o06.g1 CHROMAT_FILE:
MSMg01no462_o06.g1 PHD_FILE: MSMg01no462_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:03 2005
         (246 letters)



>mm_chr8_49257057_49257702
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagccagtggggcagcagtattgacagagagtcactgtgcccaggatgaactgggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagccagtggggcagcagtattgacagagagtcactgtgcccaggatgaactgggcag 260

                                                                       
Query: 61  gacacagtagcaccagggagcagcccttgggctggacacacacagcgaggtcaggctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacacagtagcaccagggagcagcccttgggctggacacacacagcgaggtcaggctcag 320

                                                                       
Query: 121 tgacagggcatcatggggagctttgctttctgaattctaagagcaaggaggtgaaacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacagggcatcatggggagctttgctttctgaattctaagagcaaggaggtgaaacagc 380

                                                                       
Query: 181 agcaaatcaaaagcaggaatgggcaaaggccacaaaggagttgggtgttgtctgactagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaaatcaaaagcaggaatgggcaaaggccacaaaggagttgggtgttgtctgactagg 440

                 
Query: 241 aaaagg 246
           ||||||
Sbjct: 441 aaaagg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)