BAC Information

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BAC

Clone NameMSMg01-463C21
Chromosome8 (Build37)
Map Location 89,864,697 - 90,002,151
singlet/doubletdoublet
Overlap geneCbln1, LOC100040294
Upstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819
Downstream gene4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463C21.T7 (MSMg01no463_c21.b1)MSMg01-463C21.TJ (MSMg01no463_c21.g1)
ACCAG547892AG547893
length732764
length of high quality
(start - end)		564 (83 - 646)497 (84 - 580)
definitionCHROMAT_FILE: MSMg01no463_c21.b1 PHD_FILE: MSMg01no463_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:28 2005CHROMAT_FILE: MSMg01no463_c21.g1 PHD_FILE: MSMg01no463_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,864,697 - 89,865,260)(90,001,655 - 90,002,151)
sequence
CCCAGAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCANAAA
TGCGCGGAATTCGAGGGTGGCTTCCCACAGGATAACCCCGACTTGAGAGA
GCGAGAAGGAGGCTTACAGGGCTCAGGGCTCTTACTCTGCCACACTGTCA
CAGGCAGTGTCCCCCTCAGTTAGAGGTCACGCTAATCTGGACAAGCTCCT
CAAAGCAAGAGTCTGTGCCAGCAGTTTTCAATGGATTTGTGACAAAGGAC
CAGTTTTTGTTCTCATTGTTTTGTTGGCTTTACTTCTGAACCTGACAATT
CTCAAATTACTTCATTACCTGTTGAATAATCTGAGTCACCCGATGGAATA
TTTGGATACTTGTGCAATGCCAAGATGCGACGCAGATTCTAAATGTGGGC
CCTTCTGTTCTGTAATGGTCTCACTGCTGGCAGGTAACAATAACATCACA
CCTTGAGTAGCTGTGCCCTGTATACCCATCTCATCCTGTCTTCACTCCTC
CCACCGGGTGGGGAGCTGGGGCTAATGGCTCTGTCTGAATCAGACACTGA
GACCTGGGANAATAAGGAGTGACTCCAAGATCACAATGGGCTAGGCCAGG
CATCGGCTCTGAGACCTCTGTGTGCTCTTGAGCAAGGCTAGCAACAAGTT
TGCTTCTCATCCCACACCGAATGACCCCGCCCCTACTTCCCTCACATGCA
CTTTTACAAAAGAGAAGAATAGGGAGTACCCA

NAAATCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCATAAATATCTAAAT
ATTGATATATATGATATTGTGGCTTGCTTCAAAGCTCTTACTTTAAAAAT
CTAAATCATCACCTATTTTATGTAATGACAATAAAATCCTATTTGTTTAA
AGTAGGCACAGATAAAACTTTACAAGCTTAAAAACCGACAGCAAGAATTG
TCATGCTTTTCCAACAATGAAGATATTTGGCAAAGTCTCCATATTTCAAA
TACACAAGAGAGCTTTATGACTTCCCACGACATTAATATCTGTCTATGTG
GTGGGGACACACAAGCTTTATTAATGGATTCAACATTGGCTAATACTTAA
ATTATTCCTAATATTTTTACTTTAATATTCGTAAAAACTACATAATCTTA
ATTTGTTCATTTGAAGTGTATAGCTTTGGTATGTCACGCAGCTGACCTAA
ACTTGCAGTAAGTAAGCATTTAATCCATACCCACTGGAAAAATAACTATA
CAATTAATGGTCCTACATTAAGAATGAAGTATATTAAATGTATTGGTTGT
CAGGACACAACATTTTATATACTGAGGCAAATTTGTGAGATCCCCGGAAA
AAAGGATGAAACGTAGGCGAAATGGATTTTTTCCCATCCCGGTGTTGGCC
GGCTTTAGAACTCCTTAACCAAATGTTGAGAAACCCCCAAATTGACGGAA
CCCCCGGGGCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_c21.b1 MSMg01no463_c21.b1 CHROMAT_FILE:
MSMg01no463_c21.b1 PHD_FILE: MSMg01no463_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:28 2005
         (564 letters)



>mm_chr8_89864497_89865460
          Length = 964

 Score = 1054 bits (545), Expect = 0.0
 Identities = 559/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaccccgacttgagagagcgagaaggaggcttacagggctcagggctcttactctgcca 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaccctgacttgagagagcgagaaggaggcttacagggctcagggctcttactctgcca 260

                                                                       
Query: 61  cactgtcacaggcagtgtccccctcagttagaggtcacgctaatctggacaagctcctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgtcacaggcagtgtccccctcagttagaggtcacgctaatctggacaagctcctca 320

                                                                       
Query: 121 aagcaagagtctgtgccagcagttttcaatggatttgtgacaaaggaccagtttttgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcaagagtctgtgccagcagttttcaatggatttgtgacaaaggaccagtttttgttc 380

                                                                       
Query: 181 tcattgttttgttggctttacttctgaacctgacaattctcaaattacttcattacctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattgttttgttggctttacttctgaacctgacaattctcaaattacttcattacctgt 440

                                                                       
Query: 241 tgaataatctgagtcacccgatggaatatttggatacttgtgcaatgccaagatgcgacg 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaataaactgagtcacccgatggaatatttggatacttgtgcaatgccaagatgcgacg 500

                                                                       
Query: 301 cagattctaaatgtgggcccttctgttctgtaatggtctcactgctggcaggtaacaata 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagattctaaatgcgggcccttctgttctgtaatggtctcactgctggcaggtaacaata 560

                                                                       
Query: 361 acatcacaccttgagtagctgtgccctgtatacccatctcatcctgtcttcactcctccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatcacaccttgagtagctgtgccctgtatacccatctcatcctgtcttcactcctccc 620

                                                                       
Query: 421 accgggtggggagctggggctaatggctctgtctgaatcagacactgagacctggganaa 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 621 accgggtggggagctggggctaatggctctgtctgaatcagacaccgagacctgggaaaa 680

                                                                       
Query: 481 taaggagtgactccaagatcacaatgggctaggccaggcatcggctctgagacctctgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaggagtgactccaagatcacaatgggctaggccaggcatcggctctgagacctctgtg 740

                                   
Query: 541 tgctcttgagcaaggctagcaaca 564
           ||||||||||||||||||||||||
Sbjct: 741 tgctcttgagcaaggctagcaaca 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no463_c21.g1 MSMg01no463_c21.g1 CHROMAT_FILE:
MSMg01no463_c21.g1 PHD_FILE: MSMg01no463_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:28 2005
         (497 letters)



>mm_chr8_90001455_90002351
          Length = 897

 Score =  938 bits (485), Expect = 0.0
 Identities = 494/497 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcataaatatctaaatattgatatatatgatattgtggcttgcttcaaagctcttactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctcataaatatctaaatattgatatatatgatattgtggcttgcttcaaagctcttactt 638

                                                                       
Query: 61  taaaaatctaaatcatcacctattttatgtaatgacaataaaatcctatttgtttaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 taaaaatctaaatcatcacctattttatgtaatgacaataaaatcctatttgtttaaagt 578

                                                                       
Query: 121 aggcacagataaaactttacaagcttaaaaaccgacagcaagaattgtcatgcttttcca 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 577 aggcacagataaaactttacaagcttaaaaaccaacagcaagaattgtcatgcttttcca 518

                                                                       
Query: 181 acaatgaagatatttggcaaagtctccatatttcaaatacacaagagagctttatgactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 acaatgaagatatttggcaaagtctccatatttcaaatacacaagagagctttatgactt 458

                                                                       
Query: 241 cccacgacattaatatctgtctatgtggtggggacacacaagctttattaatggattcaa 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cccacgacattaatacctgtctatgtggtggggacacacaagctttattaatggattcaa 398

                                                                       
Query: 301 cattggctaatacttaaattattcctaatatttttactttaatattcgtaaaaactacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cattggctaatacttaaattattcctaatatttttactttaatattcgtaaaaactacat 338

                                                                       
Query: 361 aatcttaatttgttcatttgaagtgtatagctttggtatgtcacgcagctgacctaaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aatcttaatttgttcatttgaagtgtatagctttggtatgtcacgcagctgacctaaact 278

                                                                       
Query: 421 tgcagtaagtaagcatttaatccatacccactggaaaaataactatacaattaatggtcc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 277 tgcagtaagtaagcatttaatccatacccactggaaaaataactatacaattaatgctcc 218

                            
Query: 481 tacattaagaatgaagt 497
           |||||||||||||||||
Sbjct: 217 tacattaagaatgaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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