BAC Information

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BAC

Clone NameMSMg01-463E09
Chromosome8 (Build37)
Map Location 108,045,555 - 108,045,796
singlet/doubletsinglet
Overlap geneHsd11b2
Upstream geneAppbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837
Downstream geneAtp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463E09.T7 (MSMg01no463_e09.b1)MSMg01-463E09.TJ (MSMg01no463_e09.g1)
ACCAG547964AG547965
length765889
length of high quality
(start - end)		242 (77 - 318)38 (85 - 122)
definitionCHROMAT_FILE: MSMg01no463_e09.b1 PHD_FILE: MSMg01no463_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:37 2005CHROMAT_FILE: MSMg01no463_e09.g1 PHD_FILE: MSMg01no463_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTAAACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAACACGACC
GCGGAATTCCAGGTTTCCCCACAAGGGGGAGTTGGGAACGGGCTCCAAGT
TGAGTCTGGAACAATAGTATGAGCAACTGAGGCTGCAGAAGTACTCAGGT
TGAGTACGGCCAGGATGATGGCATCTGGGCTTTATTCTAAGGCCCATAGA
ATCCTGGGGAAGCAAAAAGCCTTTGGGACTTGTCAGCAGCAGGGTGATAC
TGTCTTTTTAAAAAATATCCCTCTGACTTAGGCTGATGATAGATTCACGA
GACAAGTTGGGACCAGAGTGTTTTAGTTTCTTCTAGAAAGTAAGGTTTAT
CAATCACATTTGATGGGATAGCTATAGGGAACCAGATAGATGACAACTGT
CACAGAACTGATGCTCAGGCTTCAGTCAGGAGGGCCAACGTATAACACTC
ATTTGTATGGAATAATGCAGGGCTGAGTGTCCCGGAGGCTAGATTCCTCC
CAGACCTTATAGCTCTTCGGCTTGTCTTGCGCTGGCAATCCCTTGGCCTC
CCTCACCCCTGTTTAGTCTGCGACACTGTTTTTTGGTTTGTAGACACCTT
AATAATCGTGTTGTCATGGGATTTTCAGGGTGCTGGCCCAACACGGTTGC
GATTTTGATTTCCCTATGTTGTTCCATACCAACGGCGTGGTACCTCCTGG
TTCGCTCTACGATTTTGTATTCTGCCTTCGTAAATGGGTTCCTTTAGACT
CATTCCCAATCTGTG

TCTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGCACCCGA
GGTGACACTATAGAAGGTTACGAGCACCTCCTAAAAAAAAAAAAAAAAAG
GAATCTTCGTCTTAAGCTGNGGGTGGGTGAGCCCAAGGGAGAAGGTATGC
CTTCCCCCTTTCCCCCCCCTCCTTTTTCCCTTCCGCGGGGCGCACGACAC
CCCCACCCTCCCCCCCCCCCTCCCTCCCCTACCCTTCCTCACACCCTCTT
TCCCCTCATACCACACCCCGCACACCTTTTTTTTTCACGCCCACCCCTGT
CCTTCCTTCCCTCTATCTCCTCCTCTCCTTTTCCACTGACAACACCCACC
CCCCCCCCCCCTTTTCGCCTCACTTTTCCACCCCCCCCACCCCCTCCTCC
CCCCCCCCTACCTTTTTTTTTTCCCCCCCCCCCTCTTCTTAATAGCGGGC
AACTCATCCCACTCACACATCACATTTTCCTCCCCCCCCCCCCTTTTTTT
TTTCTTTTCTTTTTTCCTCCCCTGCCTTTCCCTTCCTTCCCCCCCCTTCA
CCCTCCCCCTCTCTTCCCCCTTTTCCCCCCCCCCTTCTTTCTATCTACTC
ACCACCCCCTCCTCCCCCCCTCCTCCCCTACTGTCCCTCCCTCCCTTTCC
CCCTCCTTCCCCCCCCCCTTTCTTTTCCTCCCTCCTCTTTCCCCCTACCT
CATTCCCCCTTTTATATACCACCTCCCCCCCCTTTCCCACTTTCCCCCTT
CTCCTCCCCCCCCTCCTCCTCCGTACCCCACCCCCCCCCCTCTTTTCCCT
CCCCCCCCACACCATTTTACCCCTCCTATTTCACTCACACCCCCACTCCT
CCTACACCTTCTCACCTCCCCCTATCCAACCCTCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_e09.b1 MSMg01no463_e09.b1 CHROMAT_FILE:
MSMg01no463_e09.b1 PHD_FILE: MSMg01no463_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:37 2005
         (242 letters)



>mm_chr8_108045355_108045996
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagttgggaacgggctccaagttgagtctggaacaatagtatgagcaactgaggctgc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gggagttgggaacgggctccaagttgagtctggaacaatagtaggagcaactgaggctgc 260

                                                                       
Query: 61  agaagtactcaggttgagtacggccaggatgatggcatctgggctttattctaaggccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagtactcaggttgagtacggccaggatgatggcatctgggctttattctaaggccca 320

                                                                       
Query: 121 tagaatcctggggaagcaaaaagcctttgggacttgtcagcagcagggtgatactgtctt 180
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 321 tagaatcctggggaagcaaaaagcctttaggacttgtcagcagcagggtgatactgtcat 380

                                                                       
Query: 181 tttaaaaaatatccctctgacttaggctgatgatagattcacgagacaagttgggaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaaaaaatatccctctgacttaggctgatgatagattcacgagacaagttgggaccag 440

             
Query: 241 ag 242
           ||
Sbjct: 441 ag 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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