BAC Information

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BAC

Clone NameMSMg01-463O02
Chromosome8 (Build37)
Map Location 85,407,930 - 85,580,083
singlet/doubletdoublet
Overlap geneRnf150
Upstream geneInpp4b, LOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330
Downstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463O02.T7 (MSMg01no463_o02.b1)MSMg01-463O02.TJ (MSMg01no463_o02.g1)
ACCAG548428AG548429
length788741
length of high quality
(start - end)		245 (79 - 323)512 (82 - 593)
definitionCHROMAT_FILE: MSMg01no463_o02.b1 PHD_FILE: MSMg01no463_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:27 2005CHROMAT_FILE: MSMg01no463_o02.g1 PHD_FILE: MSMg01no463_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,407,930 - 85,408,174)(85,579,675 - 85,580,083)
sequence
TTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATCAAATTCCACATGTCACCAATTTAAAGAACTAACAGT
ATTGTATGTATGTAGAAAAAAAACCCACTCACAATATAGCTGTTGCTGGC
ATTGTCAGTATAACACATCATTATTTCAGAAATGTTAGGGAGTTTTTCTA
ATCTCCTTAGAACTGATGAAATCTATTAGATGCTTAGTGGGGAAATACCA
TAGAATACTGCCTGTAGTAACTCAGTATAGAACCTGGCACATGGGAAGTA
CTAAATAAATGATTCTTAAATATATTATTTTTAGCTAGCAATAAAAAACA
GTAGATAATCTGTGAAGCCTTCAGTAGCTGACACTGGAAATATTGGCAGT
TCACTCAAATAGAATGCCATGCTCTAGAATATATTTTAAGAAAACAGTTA
AGAGCGTGCTGCATGCTAGAGGATTGGTTAATAATGATCCCTTCTGATTG
GTAGACCCACGTTCTGCTTAAGTTGTCAACACGTATGCTCCCTTTTTTTA
TAAATCTGTTGGGTTACATTGCCTGATGTTGCATATCTGTTTATAATTGC
CTGAGACAGTGTTTTTTTTATCACTCCCTTTCTTGAACTGCTTTTGTCTT
ATCTTTTTGCACAACTGACTTTCTCTTCTTATCCTACCTCCTCTAATTCA
TTACACATTTTCCTTTTTGTTTCCTCACCCTTTATTGCCAGCAGTGCTCT
CCTTGCTCTCTCTGTTTACTTTCTTCAATCTTATTTTG

NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGCAAGTAACATCTGA
TTCCAATCCCCCACTTTAGAAAAAAACAAACCATCACTTAGAAAGTGCAA
TGGTTTAGATGTTGTCTCCAAAGGTTCATAGTTTGGTCTCCAGGTTAGTG
ATTTTGGGGGTTGATTGGAAAACCTTTAAGATGTGTTAGGTCACTTACAG
TTGGGTTCTCAGAAGGGGCTATGAAGCCTCACTGTTTTTCTCATCCCTGT
AAAAGGTATTTAATCTCAGGCCTACCCTGATAAAAGAGGGTACATATCCA
TTTTCCACCATGACAATAAACTGTTTAAAACGGTGGACTGTCTCTTTTCA
CCAATGTACTCCATGGAGGGCCATGAAGAAGGCCTTTGCCTACAGAGCTA
CAACCTAATCTCCCAAAGAAGACCCCTCTGCACTCCCAGCCCAACTGCCA
CCAACCCTGCAAGCTAAGGACAATCATCTCTGCTGGGACAAGCTGGAGTT
TCCCTTCCTACCCACCCCTGACCCCAAGCCCCAAGCCAGACACTGTCCCC
AGCCCACTGACCCCAGTGGTGCCTAGATGTCCAAGAATCTGAAAACCCCA
TGGCCCAAGCCTTGTCTCATGCCCGGGGAACCCCTAACCAGCTTCAGCTT
TTCCACTTCTTCAACTGTGTTTTTCTTCGCCCCTGAACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_o02.b1 MSMg01no463_o02.b1 CHROMAT_FILE:
MSMg01no463_o02.b1 PHD_FILE: MSMg01no463_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:27 2005
         (245 letters)



>mm_chr8_85407730_85408374
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaatttaaagaactaacagtattgtatgtatgtagaaaaaaaacccactcacaatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaatttaaagaactaacagtattgtatgtatgtagaaaaaaaacccactcacaatata 260

                                                                       
Query: 61  gctgttgctggcattgtcagtataacacatcattatttcagaaatgttagggagtttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgttgctggcattgtcagtataacacatcattatttcagaaatgttagggagtttttc 320

                                                                       
Query: 121 taatctccttagaactgatgaaatctattagatgcttagtggggaaataccatagaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatctccttagaactgatgaaatctattagatgcttagtggggaaataccatagaatac 380

                                                                       
Query: 181 tgcctgtagtaactcagtatagaacctggcacatgggaagtactaaataaatgattctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctgtagtaactcagtatagaacctggcacatgggaagtactaaataaatgattctta 440

                
Query: 241 aatat 245
           |||||
Sbjct: 441 aatat 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no463_o02.g1 MSMg01no463_o02.g1 CHROMAT_FILE:
MSMg01no463_o02.g1 PHD_FILE: MSMg01no463_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:28 2005
         (512 letters)



>mm_chr8_85579675_85580586
          Length = 912

 Score =  783 bits (405), Expect = 0.0
 Identities = 408/409 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggcaagtaacatctgattccaatcccccactttagaaaaaaacaaaccatcacttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tggggcaagtaacatctgattccaatcccccactttagaaaaaaacaaaccatcacttag 350

                                                                       
Query: 61  aaagtgcaatggtttagatgttgtctccaaaggttcatagtttggtctccaggttagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaagtgcaatggtttagatgttgtctccaaaggttcatagtttggtctccaggttagtga 290

                                                                       
Query: 121 ttttgggggttgattggaaaacctttaagatgtgttaggtcacttacagttgggttctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttttgggggttgattggaaaacctttaagatgtgttaggtcacttacagttgggttctca 230

                                                                       
Query: 181 gaaggggctatgaagcctcactgtttttctcatccctgtaaaaggtatttaatctcaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gaaggggctatgaagcctcactgtttttctcatccctgtaaaaggtatttaatctcaggc 170

                                                                       
Query: 241 ctaccctgataaaagagggtacatatccattttccaccatgacaataaactgtttaaaac 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ctaccctgagaaaagagggtacatatccattttccaccatgacaataaactgtttaaaac 110

                                                                       
Query: 301 ggtggactgtctcttttcaccaatgtactccatggagggccatgaagaaggcctttgcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ggtggactgtctcttttcaccaatgtactccatggagggccatgaagaaggcctttgcct 50

                                                            
Query: 361 acagagctacaacctaatctcccaaagaagacccctctgcactcccagc 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  acagagctacaacctaatctcccaaagaagacccctctgcactcccagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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