BAC Information

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BAC

Clone NameMSMg01-464I10
Chromosome8 (Build37)
Map Location 60,866,549 - 60,866,895
singlet/doubletsinglet
Overlap genenone
Upstream geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464I10.T7 (MSMg01no464_i10.b1)MSMg01-464I10.TJ (MSMg01no464_i10.g1)
ACCAG548921AG548922
length754764
length of high quality
(start - end)
---347 (79 - 425)
definitionCHROMAT_FILE: MSMg01no464_i10.b1 PHD_FILE: MSMg01no464_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:19 2005CHROMAT_FILE: MSMg01no464_i10.g1 PHD_FILE: MSMg01no464_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCGCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCCCCAGAGGAG
GCGCGGAATTCCTTTATTTCCTCAACTTGGTTGAAAATTATTCCTGTAGC
TTGGCTGTGGCGGCACATGCTTTTTAATCCCAGCACTCACGAGGCAGAGG
CAGGAGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACCAAGCGATTTCCA
GTACAGCCCGGGCTATACCGATTACTCCTGTTTCCTACAATACCTCCATG
ACAGAATCTTATTTTATGATTGACTGATCGACAGAATGTACGACTTTACC
AGATCACAACCGACCTGATCTTATTTTATTTTACATGACCGCCCCATTAT
TATTATATCCTCCGTCCCTTGTCTTAAGGCCCCTCTCCCCCCCATTTATT
ATCTTTGATTTCTGCTCCTTTCTTCTTTGATCACCTTAACGATGTCTACT
TCTTTGTCATCCCGCTTTATTTTTTCCCTTTTTTTTATCTATCCTCCCGC
CCATCCCTTCTCTCTCATTTTCTTTTCCATCTCTTCCTCATCACATTACC
CATTTCACTATTATCTCTGTTATCGCCCTATTTTGACTCCCCTCTTTTGT
TTCCCCCTCCTTTTTGTTTTTATCTTTTGCTCTCTTTTCGCTATCCTGTT
CTCACTTACTTTCCTCCCCTTTTTCTTCCTTTCGTCTTCTCCTTTTCTTT
TCTTCCTTCATCCCTTTCCCCTTTTCTTACTTCTTTTCCCCCTTTTATTC
TCTG
NTTCGATTATACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAATAAAGACTCAAAGCCA
AAGCCTGTGACTCTTGAGCCATATTTATATTCAGTACACTACTTTTAATT
TTTCTTTTATTTAATTTTGTGTCTGTGTTAATTTTTAACGTACACGCCAT
GTGTAAAGTCAGAAGATAACTCGTAGGAGTTGGTAGACTCTTTCTGTAAT
GTGTATTCTGAGGATTGACTCAGGTCATAAGGTTCAGCATCAAATTCTAG
CTTAGCCATCTTGCCCGTTCCTTCTTTCCTTGTAAGAACGGCAAGCACAG
GCTTTGTGCATTATCCAACTGCGTCTTTCTCTTCTAGGAAGCTTTCAAAC
AGGGAAATCATTTTTACTTCCATGTATATAGAGTCAATGTTTCTGAGTGG
AGTTTCACCCCGTTTCTTCCTTTCTGACACTAGTTTAAGGCTCCTATGTC
AGCGTTCATTATGTCCTATTAAGTATAGGACGCTTTTCCGCTCTGTCTTG
TTATGCTCTGTCCAGTTTCCCACTTTTCATATTTTCCTTTTAATATCCCT
CCTTCTTCCTGCTAACTTACTTGTCCTCTTTCCTCACTTTGCCTCCTTCT
TCCTCTTTTTTTTTCCTTCTCCTTCCTTCTACCTCTCCATCCTTCCACAA
TATTTCCTTTTCCCTTTTTTTTCCCCCCCCTCTCACTTTATTCTCTCCTT
TTTTCCTATTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_i10.g1 MSMg01no464_i10.g1 CHROMAT_FILE:
MSMg01no464_i10.g1 PHD_FILE: MSMg01no464_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:20 2005
         (347 letters)



>mm_chr8_60866349_60867095
          Length = 747

 Score =  588 bits (304), Expect = e-172
 Identities = 336/352 (95%), Gaps = 10/352 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaataaagactcaaagccaaagcctgtgactcttgagccatatttatattcagtaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaataaagactcaaagccaaagcctgtgactcttgagccatatttatattcagtaca 260

                                                                       
Query: 61  ctacttttaatttttcttttatttaattttgtgtctgtgttaatttttaacgtacacgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacttttaatttttcttttatttaattttgtgtctgtgttaatttttaacgtacacgcc 320

                                                                       
Query: 121 atgtgtaaagtcagaagataactcgtaggagttggtagactctttctgtaatgtgtattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 atgtgtaaagtcagaagataactcgtaggagttggtagactctttctgtaatgtggattc 380

                                                                       
Query: 181 tgaggattgactcaggtcataaggttcagcatcaaattctagcttagccatcttgcccg- 239
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 381 tgaggattgactcaggtcataaggttcagcagcaaattctagcttagccatcttgcccgg 440

                                                                       
Query: 240 ----ttccttctttccttgtaagaacggcaagcacaggctttgtgcattatccaactgcg 295
               ||     |||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct: 441 actgtt-----tttccttgtaagaacggcaagcacaggctttgcgcattacccaattgcg 495

                                                               
Query: 296 tctttctcttctaggaagctttcaaacagggaaatcatttttacttccatgt 347
           |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 496 tctttctcttctaggaagctttcaaacagggaaatcatttttacttacatgt 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)