BAC Information

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BAC

Clone NameMSMg01-464L07
Chromosome8 (Build37)
Map Location 53,643,929 - 53,644,101
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688, Aga
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464L07.T7 (MSMg01no464_l07.b1)MSMg01-464L07.TJ (MSMg01no464_l07.g1)
ACCAG549057AG549058
length767767
length of high quality
(start - end)
235 (84 - 318)174 (78 - 251)
definitionCHROMAT_FILE: MSMg01no464_l07.b1 PHD_FILE: MSMg01no464_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:34 2005CHROMAT_FILE: MSMg01no464_l07.g1 PHD_FILE: MSMg01no464_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAGAATAAT
CCGCGGAATCATTGTTTTTCCTAACTGAGTAGNACTCCATTGGGTAAACA
TATCACATTTTCTGTATCCATTCCTCTCTTGAGGGAAATCTGGGTTCTTT
TCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATG
TGTCCTTATCACATGTTGGAGAATCTTCTGGTATATGCCCAGGAGTAGTA
TAGTTTGTTCCTCAAATAGTACTCTATCCATTTTTTTAAGGAATTGCCAA
ACTGATTTCCAGAGCGGTTGTTCTCTTTTGCAATCCCACAAGCAACAAGG
AGTGCCTCTCTTTCTCTACATCTTCACCAGAATCTGCTGTCACTAGAATT
TTTGATCTTAGCCATTCTTACCGCCGTGAGATAGAATCTCACAGTTGTTT
TGATTTCTATTTCCCTAATGACTAATGAACCACGCTGAACATTTCTATAT
GTGTTTATCACCCTTTTGATATTCTTCACCTGAGAATTCTTTGCTCAGTT
CTGCACTCCCTTTTTTTTCATACGTTTACCTCGCTTTTCTCTAATTCGTT
ACGTTTTTTGCACCCATCTGTAACTTTCCCCTCTAATGACTTCAGGAATT
GTTTATTCCTATTCTTTCTATATCCGTTAGATCTGCCGCCTTATGCCACT
ATCTGCCACTTTGCACCCTGACCTTAACTCTTACCCCCCACACTTTTTTC
AATCACTGTTCCTTTTT
TTTTCGATGCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAACAGAGATTCTGTGTGCATATAT
GACTTTGGAAACTCTGAGTTCTATGGGAGTTTTTGTGGTAATTTCAGAGC
ATCCAAAATAGTTATGATTTTGTAGATTTTTATAACTAGACCTGTGTATA
TTGAATATTTAGATAGTTCCTGGTAACAAAGGTTTACTCTATTTGTATCT
TTACACAGGGCTCAAAATTTTTAACAAAAGAGGTTTTGTTCATTTATTCT
TAAGACATGGTCTCATTACTGTTTTCTAGCATGCCTGAAACTCTGCCTCT
GCCTATAATAGTGCTACGATTAAATATGTGTGCTACCACACATGATTGAC
AGCTTTTGAATATACGCCAAGATGATGTTTTTGACCTCCTTCATGTTATT
CATATGCTCTGCCCTATAGAATTTTATTTTGCACAATACTATATTCCAAG
AATGTTATTTACAATTATACCCTCTATTATCATGTTTATTTTTGACATTG
TTTTTTGTCTCCTATATCCTTCTCGTCTTTTTCTACCAACTCTATCTTTC
TTCATCTCCTCATTCTCCTCTATTCTCCCTCCATCCTCCTTCTTTCACAT
TATTTTTTTTCGTTCTCCCCCTTTTTTTTTTTCTCCCTTTCCCCGCCTCC
TTTATATTTCCTTATTTCCCTATTACCCCTCTGTGTGTTCCTCCATCTCC
GCCTCTGTATTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_l07.g1 MSMg01no464_l07.g1 CHROMAT_FILE:
MSMg01no464_l07.g1 PHD_FILE: MSMg01no464_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:34 2005
         (174 letters)



>mm_chr8_53643729_53644303
          Length = 575

 Score =  304 bits (157), Expect = 2e-87
 Identities = 169/173 (97%), Gaps = 1/173 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagagattctgtgtgcatatatgactttggaaactctgagttctatgggagtttttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acagagattctgtgtgcatatatgactttggaaactctgagttctatgggagtttttgtg 314

                                                                       
Query: 61  gtaatttcagagcatccaaaatagttatgattttgtagatttttataactagacctgtg- 119
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 313 gtattttcagagcatccaaaatagttatgattttgtagatttttataactagacctgtgt 254

                                                                
Query: 120 tatattgaatatttagatagttcctggtaacaaaggtttactctatttgtatc 172
           ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 253 tatattgaatatttagatagttcctggcaacaaaggtttacactatttgtatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 575
Length adjustment: 8
Effective length of query: 166
Effective length of database: 567
Effective search space:    94122
Effective search space used:    94122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)