BAC Information

Click to search

BAC

Clone NameMSMg01-464L12
Chromosome8 (Build37)
Map Location 116,844,261 - 116,844,495
singlet/doubletsinglet
Overlap geneAI427515
Upstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7
Downstream geneClec3a, Wwox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464L12.T7 (MSMg01no464_l12.b1)MSMg01-464L12.TJ (MSMg01no464_l12.g1)
ACCAG549067AG549068
length1,009734
length of high quality
(start - end)
---238 (74 - 311)
definitionCHROMAT_FILE: MSMg01no464_l12.b1 PHD_FILE: MSMg01no464_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:35 2005CHROMAT_FILE: MSMg01no464_l12.g1 PHD_FILE: MSMg01no464_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTATAAAAAATTGGGCGGTTGCGAANNANAANNGGNTGAATGCGTTACC
TAGANNGGNGGGGAAGNNANTGAGTAGACACAAAAAGAGGGGGGGGGANN
NNNGAAGAAAAGGTACTGANACGAACCACAAGAATACCAGGTGATGAACA
ATAGATATCAGACCACGAGGAAGCTCGGAACATAGGATATATAAATTCGT
GACGGTTGCTGATCCAGTGATTTGTCAGCTTGTTAACTTCTCTGCCTCAG
GTTCAGATGAGTTCTACGACTAATCGGCTGTTTACAGTATCATTTAACAT
GTTTCTACCGATTTGTGACCGCATATTATCTGCATCACTTCTCCCTTGAT
GTCGCTCTGCTGCTACCCAAGCTACAAAAACAAATTTTTTTTCTTTTATA
GAATATCTTACGAACACACTCAAACCTTCAGAAACAGAGTGATATTTTAT
AAAATATATGACCACAAGATAAATCGATGTTTAAAACTAGTAGTTATTGT
CGCCACACCGCACGCAGTAGTATGCTACTAATTTCATNATCGTAATCACC
ATAGCATATTGTCTCCTCCGATACCATCTTCTATATCTATAACCCGCCAA
ACCCACCGTTTTCACTAGATAATGCAGGTTAATTAACATATGTCCCCCTA
GACCACCATCCATCAATTGGCCCCGCATCTATATGGCCGTCGAGATTTTG
TATATTAATCCGATACCAAGCTCGATCGCTTATTTAATGCGGCTCCGATG
TAAAATAATATGCAACGTTTATTTACAACACACATTATCCCAGCAACGCA
CCTTGCTTCAGAACAGTAAGTTATACCGTTTATATCGCCGCACATATATC
CCTGCATTCTCACAATTATACCCCCTATTCCATTTATATAACACTATAAT
TACTACGAGTTAATTGCCTCGCGATAATTTATGATATTACTAGCAGTCGT
GACTATTTATAATCTCCTCTGGTATATCTATCCGCCACTACACTATATGT
TATAATTCN
TTCGATGCAGTGGGAGGCCAGGNGGNCGCCTTTTCAAAACAGGAGGNGAA
CTATAGAATGACTCACGTAATTCAAAACTAAACCAATGTTGTGGTTTGGC
TTGTCCACAGCTTCTCTTAACACAGAGTTTACAGGGCTACGGGTAGGACT
ATTGACCATGGGTTGAGAAAGATTTATATAGGGTGGACTAAATTTCCATT
CTGTCTAATCTAAAGACTGTTTCATCAAGCCCCTTGCCATTTTCTCTGAA
ATGAGAATCTCTGAAAGTGGGGGATAGTTACAAAATATTACTTTTCTACT
GCAAACACTTTGGTCATTGCAATCTATAAAAGAAAGAGTTTAACTGGACT
TTTGTTTTCAGAAGGTTAGAATCCACTATGGCTGAGCAAAGGCATGGCTA
TAGGAACAGCTGAGAGCTCACATCTCGATCCACAATCTCAAGGTGATGAG
CTAACTGGGAACTATATGAGGCTTTTGAAACTTCAAAGCCTGCCCCCAGC
GATTCACCTCCTCTATCAAGATCACACCTCCTAATCCTTCCCAAACTGTT
CCACCAGCTGGGGGTCACTCTTATCTAAACCACTACAACACTGTATTATT
TACTTCTCTCCTTACTGGGACAGAACACCTCTCCTATTTTGTTCTGGTAG
GAAGAATCTATTTTGGTTCTCGATTTAGTAGGTTATTTTTTCATTACGCC
TTTACAGCATGCCGATGTTGACTCTATTGTGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_l12.g1 MSMg01no464_l12.g1 CHROMAT_FILE:
MSMg01no464_l12.g1 PHD_FILE: MSMg01no464_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:35 2005
         (238 letters)



>mm_chr8_116844061_116844698
          Length = 638

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaactaaaccaatgttgtggtttggcttgtccacagcttctcttaacacagagtttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaactaaaccaatgttgtggtttggcttgtccacagcttctcttaacacagagtttaca 260

                                                                       
Query: 61  gggctacgggtaggactattgaccatgggttgagaaagatttatatagggtggactaaat 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gggctacgggtaggactattgaccaagggttgagaaagatttatatagggtggactaaat 320

                                                                       
Query: 121 ttccattctgtctaatctaaagactgtttcatcaagccccttgccattttctctgaaatg 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccattctgtctaatataaagactgtttcatcaagccccttgccattttctctgaaatg 380

                                                                  
Query: 181 agaatctctgaaagtgggggatagttacaaaatattacttttctactgcaaacac 235
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 agaatctctgaaagtgggggatagttacaaaatattacttttctattgcaaacac 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)