BAC Information

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BAC

Clone NameMSMg01-464M06
Chromosome8 (Build37)
Map Location 93,166,393 - 93,166,632
singlet/doubletsinglet
Overlap genenone
Upstream geneTox3
Downstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464M06.T7 (MSMg01no464_m06.b1)MSMg01-464M06.TJ (MSMg01no464_m06.g1)
ACCAG549103AG549104
length835769
length of high quality
(start - end)
---241 (76 - 316)
definitionCHROMAT_FILE: MSMg01no464_m06.b1 PHD_FILE: MSMg01no464_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:38 2005CHROMAT_FILE: MSMg01no464_m06.g1 PHD_FILE: MSMg01no464_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTCAAAAAAGGCGGCGGGAAAGGACTCACTATTTCGAGAGGAGCCGCG
GAATTCACTGTATTTCGATGTCTCCTTGAACTCTGCAGGGATGTGGGGGT
GGGAGTGGTTAAGTTTTTTACCCGGGCTGAGGTACCGGACGCAGACAGCG
TGGGACGTTCCATCCGGAGGGGGGGGGGAGGAAACCCCATTTCACCCCTT
CCGACCCAACACAACTGCTTTCGTGATACTATAGACGCGACACCCCACGC
TGTCTACAACTATTCTATTTTCACCAGGCACCGAGCGACAACGACATTAA
GCAGCACCCGAACCAAACAAAAATTTTTTTTACAAAACAAAACAAACATG
AAAATGAGGAGGAAATAACGCTACATTACCCCTTAAACCCCCGACGGGCG
GGCCCTAATATAACTCCGAAGCGTATCGTCTAATCTTCCTACCCATTCAA
AAAAAAAACAACACCGTCTATCATACCTATCCTCCCTCACACCGATTAAC
AGCCCCCGTAACTGCCTAATAGATTAAATCCCCACGAACATCCTGTTCGG
AGGACCCATACGCACGTCGAAACCAGTCCTTGCTTCCGCGTCAACCGGAA
TACTCAAGCTAATCTGACATAAGACAACACTTTAAGTAGCGGACACGAGC
ACATGGCTAATCACACACCATATATTATTCTTTACCTTCATCGATGAATG
ATACGCCGAACCCTATGCACCCTTTCATATTACATCCACTTAATTCTTTC
ATGCCACGAACCGCCAATAACGGCAACCATCCATAGGTTCGGTTACCCCT
TTTCATGCCATGTTTACCCCACTAGCTCGAGCCGN
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGCAGTCCGCCCGAGCTGAGTTC
ACAGAATCTAATGGGGGTCTTGCAGAAGGGGCTCTGAGCTCTGCACTTGA
CTTTCCCACCCTCTACAGTCAGCTTCCTTGTGATCAGCCTGTGCAGGGAT
GGCATGCACTCTGTAGATAAGCAAAGAGGATGAAAAATCCTTTGCCTCTT
TCTGCCCCTCCCTCCTTATTCTCCCTTCAAAGCAAATTGCAGAGAACAGT
TGTGCTCCAGTCGGGTTTTACTGCTTTATCACAGCACAGAGCTCTGAGCA
ACTTAATCCTGTTTCTTGCCCCCCAGGGCTGCATCATCGCGGCAGGTTAC
CAGCTGTAGGGTAACAATGATCTTCTGTGGCTACTGATATATTTTTTTTC
AAAGTACATTTCAGAGGAATACACATTTTAACGCCATAGACAACCTTGTC
ACTTACTCCAGTCCGCTTTTAATTTCCTCCGCACTATGTATACGTATCGT
CGATATGATTTTTTCCTACCTTGCACGGATACCTGCTGTTCTTTGCATTG
CTGGCGCTTTCTCCCTCCACTCTCCCTCTTCCCCCTTGTATTTCCTCTCC
CCCCGTTTTTTTTTTTTTTTCTTTACTTCTCCTCACTTGCCTTCTCCTTC
GTTTCCTCCACTCCTCATTTTTCCTTCTTCTCCCCCTTTATCTTCCCCTC
TCTTCTCTCCTCTTTACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_m06.g1 MSMg01no464_m06.g1 CHROMAT_FILE:
MSMg01no464_m06.g1 PHD_FILE: MSMg01no464_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:38 2005
         (241 letters)



>mm_chr8_93166193_93166833
          Length = 641

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggcagtccgcccgagctgagttcacagaatctaatgggggtcttgcagaaggggctct 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 tgggcagtccgcccgagctgagttcacagaatctaatgggggccttgcagaaggggctct 381

                                                                       
Query: 61  gagctctgcacttgactttcccaccctctacagtcagcttccttgtgatcagcctgtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagctctgcacttgactttcccaccctctacagtcagcttccttgtgatcagcctgtgca 321

                                                                       
Query: 121 gggatggcatgcactctgtagataagcaaagaggatgaaaaatcctttgcctctttctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggatggcatgcactctgtagataagcaaagaggatgaaaaatcctttgcctctttctgc 261

                                                                       
Query: 181 ccctccctccttattctcccttcaaagcaaattgcagagaacagttgtgctccagtcggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccctccctccttattctcccttcaaagcaaattgcagagaacagttgtgctccagtcggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)