BAC Information

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BAC

Clone NameMSMg01-464N14
Chromosome8 (Build37)
Map Location 91,572,470 - 91,572,698
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089
Downstream geneEG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464N14.T7 (MSMg01no464_n14.b1)MSMg01-464N14.TJ (MSMg01no464_n14.g1)
ACCAG549167AG549168
length747843
length of high quality
(start - end)
228 (88 - 315)73 (72 - 144)
definitionCHROMAT_FILE: MSMg01no464_n14.b1 PHD_FILE: MSMg01no464_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:45 2005CHROMAT_FILE: MSMg01no464_n14.g1 PHD_FILE: MSMg01no464_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATAATTCGGCCGCAAAANGAANNCACACTGCGNCAGCAGGCGNGG
AANNCANNCAGTTACCTAAAAACCCCGNACNNNGGNCACAGAGGAAACAT
CCCCTGACAGCCTGGTGTTCGACTCTAATGTGGTCAAAGCAAACTATGGA
GCCGGACCTATGCAAATCTCTACAGAAACTCGAGGTTAGATGTATTTTAC
ACTAAGTAACACTCAGGGGCCATCTTCTTGGGATTGTACTTTAATAGATT
TATGCCAGAGAGGCTAGGGAAAATTAAGAAAAATATAAATTTAAGTCAGA
GATCGGAATGGTAATCCGTGCCTATGGGGAAGAAAACCACAAGCGCTCCC
CCCCTCACACTGTCTTGAAAGCGTGGATGATTTCAGAATCCCACCCTACG
AGAAAGCAAGGAGATGCACGGTTTGGAGTTAAGAAACGTAAGTGTCTCCA
GTCCCCAGTTGCACATTAAACTAATGTCAAGTTGAAGGAAATCGTATTGC
TGCTGAGGCTGGAGAAAGATGTCTGAGCGCACTAATTAATGTTGCACGTT
TGAAGGAGAAAGGCTGCCAGGCTAATGGAACCTGAAGAGAGGTAAAACTC
CTCCTGTCCAGAGACAAGACACTTTCCCACCCAATACAGGACAATATTTT
TTCCTTACAGTAGAGAGGAACCCTTCGAAACCTTCCCTGTGAACGCCATT
TCTCGGTTGACTTGTGCGTTACCTGCTCGTCCCCCCTCCTTGTTATG
CCGATGCTGTGGGTAGGCCTGGGGCGCCTGGTTCATACTTTAGGTGACCT
ATAGAAGTTCAGCGGAATCAGTCTAAGAGGAGGGATCTAATTCCTGGAGC
TGGGGCCGGGGCAGGGGTGGGGGCAGGGGTAGGGACTGGGTGGGGAGGTT
GTCTTTTCTCTCGCGTCTCTTTTTTCCTGTCCCCTTCCCCTTTTTCCCCC
TTTTCCCCCTCTCTCTCTCTTCTCTCCTCTTCCTTGCTCCTTTTTTTTTT
TTCTCTCTCTCCTCCCTTTTTCTTTCTCTTTTCCCTCCCTCCCCTTCCCT
CCTCTTTTCCCTCCTCTTTCCTCCCTCTCCCCCTTCGCCTCTCCCTCCTT
TCCTCTTCCTCTCTTTTTTCTCCCCCCCTCTTCCTCCCTTCCCCTCTTCC
CTCCCCTCCCCCCCCTTCTTTTTCCTTCTCCCCTTCCTTTTTTTTCCTCT
TCTTCCCTTTTCCTTTCTTTCTTTCCCTCCCCTCCTTCTTTCCTTCCCTT
CCTCCTCCCTCTTTCCGCTCCTTCCCTTCTTTTTCCTCCTCCCCCTTTTC
TCCCTTCTTTTCCTCCCTTCCCCCCCCCCCTTTTCCTTCCCTCTTTTTTC
TTTTTTTCCCCTTCCGTCTTCTTTCCCCCCCCCTCCCCTTCCCCCTCCTT
CTTTTCCCTTTCCTTTTCCCCCCTCCCCTTCCTTTCCCCCCCCCTCTTCT
CCCTTTCTTCTCCCCTTTTTCTTCCCACCCTCTCCTCCTTCCCCTTTTTT
TCTCCCTTTCTCCCTTTCCCTCCCTCTTTTTTTTCCTTTTTCTCCCCCCT
TTTTCCCTCCTTTTCCTCCCTTTTTCCTCCTTCTTCCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_n14.b1 MSMg01no464_n14.b1 CHROMAT_FILE:
MSMg01no464_n14.b1 PHD_FILE: MSMg01no464_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:45 2005
         (228 letters)



>mm_chr8_91572270_91572898
          Length = 629

 Score =  412 bits (213), Expect = e-120
 Identities = 225/231 (97%), Gaps = 5/231 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaggaaacatcccctgacagcctggtgttcgactctaatgtggtcaaagcaaactat 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 429 acagaggaaacatcccctgacagcctggtgttcgaatctaatgtggtcaaagcaaactat 370

                                                                       
Query: 61  ggagccggacctatgcaaatctctacagaaactcgaggttagatgtattttacactaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggagccggacctatgcaaatctctacagaaactcgaggttagatgtattttacactaagt 310

                                                                       
Query: 121 aacactcaggggccatcttcttgggattgtactttaatag---atttatgccagagaggc 177
           ||||||||||||||||||||||||||||||||||||||||   |  ||||||||||||||
Sbjct: 309 aacactcaggggccatcttcttgggattgtactttaatagaaaa--tatgccagagaggc 252

                                                              
Query: 178 tagggaaaattaagaaaaatataaatttaagtcagagatcggaatggtaat 228
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tagggaaaattaagaaaaatataaatttaagtcagagatcggaatggtaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 629
Length adjustment: 9
Effective length of query: 219
Effective length of database: 620
Effective search space:   135780
Effective search space used:   135780
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)