BAC Information

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BAC

Clone NameMSMg01-464O12
Chromosome8 (Build37)
Map Location 26,954,635 - 27,186,087
singlet/doubletdoublet
Overlap geneAsh2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3
Upstream geneAdam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star
Downstream gene1700047A11Rik, Rnf170, Thap1, Zfp703, Erlin2, Prosc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464O12.T7 (MSMg01no464_o12.b1)MSMg01-464O12.TJ (MSMg01no464_o12.g1)
ACCAG549211AG549212
length738750
length of high quality
(start - end)
199 (78 - 276)201 (319 - 519)
definitionCHROMAT_FILE: MSMg01no464_o12.b1 PHD_FILE: MSMg01no464_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:49 2005CHROMAT_FILE: MSMg01no464_o12.g1 PHD_FILE: MSMg01no464_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,185,889 - 27,186,087)(26,954,635 - 26,954,835)
sequence
GGCCCTAAAATTTGCGGCGCAAAACGAAGCACCATTCGTAACCATCCGCG
GAANNCNGTNGTGGCAAAAAAAACGTGCACATGCTCAGCAAGCACCCTGC
CACTGAGAGACTTCTGTCCTTCTATCTCTCAGTCCTGGCCTTTGATGGTT
TATACATGCACACAGTTTGGTCCTTTTAGCAGCCCCCTCTCCATTGTTCT
TTCTCATTCTCCTCCCACTGAACTCCTTCCCAACAAATCCTGGTCCTTTT
TAAATAACTTTTTGTGCGAGTTGTGTTGCTGCAGCTGTTTTGCGATCCAC
TGTGCTTAAGTATTTATTCTTGTAGAGCACGTGCAGCTCAGTAGTGACAC
ACCGCGATTATTGTGATTCCCCTTACACAGTTATCATCTATTACGAATGA
ATTGCTTGCTGTTGCTCCTATTTCTGAGAAGTCACTGTCTTTATTTGTCT
AGCCACTCTCTTATCATACTGATTATAATAATATATCCCCGAGGAAAAAA
GTTTTCTAACATTACGTTATGTTCGACTCTTATACCTGGCGCTCTTATTG
AAAATGAGTGCCAAAATCGATATGTTTGATCCTAACTGTACTACTCCGCT
TGTATTGTTTTTTGCTCTTCATATTTATTCACTGACTATTCTTTTTTTTT
TTCTGCACTATTCTTGCTGTCTCCTCCCCCATTTCTTTTCTTACTTCTTA
CTTCCCCTTTTTTCACTCATATTCACACTCTTTCCCCG
NCCGATGAAGTGGGAGGCCTGGGGGCGCCTGGTCAAAAATTTAGGTGACC
TATAGAATGTCAGCAGAAATCCTTCTTGGGGAGCAGGCCTCTGAGCTAAG
CAGAAAGTGCTTGGTTAACCCCGGAGTAGCCACATCTTATCCCGCAGGTT
GGTATGGTAGCTCACGGGGGTTCACACTTGAACAAGACTCCTCACATCGC
TTTTCCTCCAGTAATCCACACAGAAGCTTCTGGCCCTATGACCTCTAACT
AACACAGATCGACGTTTTCAGGTCAGCTCCAGTCAGATTTCTCAATGTGC
CATAATCATTGGGTANATTGTCTTCAGCAATCTGGTCTTATCATCTATTT
CTGGCTGGCGACCAAGATCGGCAAAGCCTCTCTGACCAATGACGAATAAG
GAGATACCTCTAGCCTGGCTTTGGGATTTTTGTTCAATAACCTGTGACTC
CATCCAGCAATATCCAGCCATGCACGGTACTTCCATCATTTTTTTTCCTC
TACATTTAAAAAGGAAAGCTTAGTCAGGCGTGGCGGAGCACACCATTTTA
ATCCCAGCACTTGGCAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGACCC
ACCTGGTCTACCGGGTGAGTTCCCCGTACAGCCCGGGCTTATTTTCATAA
ATCCCGTCCCCCAAAATCTCCTTCTCATCATTCCCCCACGAAACTTTTCC
CCCTTTTTTAGAACTCTCCATTCTTCCCCCATGATGTTCCCTTTGTACCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_o12.b1 MSMg01no464_o12.b1 CHROMAT_FILE:
MSMg01no464_o12.b1 PHD_FILE: MSMg01no464_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:49 2005
         (199 letters)



>mm_chr8_27185689_27186287
          Length = 599

 Score =  354 bits (183), Expect = e-102
 Identities = 195/199 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatgctcagcaagcaccctgccactgagagacttctgtccttctatctctcagtcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cacatgctcagcaagcaccctgccactgagagacttctgtccttctatctctcagtcctg 340

                                                                       
Query: 61  gcctttgatggtttatacatgcacacagtttggtccttttagcagccccctctccattgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 339 gcctttgatggtttatacatgcacacagtttggtccttttagcagcccactccccattgt 280

                                                                       
Query: 121 tctttctcattctcctcccactgaactccttcccaacaaatcctggtcctttttaaataa 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 279 tctttctcattctcctcccactgaactccttcccaacaaatcctgggcctttttaaataa 220

                              
Query: 181 ctttttgtgcgagttgtgt 199
           ||||||||| |||||||||
Sbjct: 219 ctttttgtgtgagttgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no464_o12.g1 MSMg01no464_o12.g1 CHROMAT_FILE:
MSMg01no464_o12.g1 PHD_FILE: MSMg01no464_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:49 2005
         (201 letters)



>mm_chr8_26954435_26955035
          Length = 601

 Score =  358 bits (185), Expect = e-103
 Identities = 197/201 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcttcagcaatctggtcttatcatctatttctggctggcgaccaagatcggcaaagcc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tgtcttcagcaatctggtcttatcatctatttctggttggcgaccaagatcggcaaagcc 260

                                                                       
Query: 61  tctctgaccaatgacgaataaggagatacctctagcctggctttgggatttttgttcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctgaccaatgacgaataaggagatacctctagcctggctttgggatttttgttcaat 320

                                                                       
Query: 121 aacctgtgactccatccagcaatatccagccatgcacggtacttccatcattttttttcc 180
           ||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct: 321 aacctgtgactccatccagcagtatccagccatgcaaggtactttcatcattttttttcc 380

                                
Query: 181 tctacatttaaaaaggaaagc 201
           |||||||||||||||||||||
Sbjct: 381 tctacatttaaaaaggaaagc 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)