BAC Information

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BAC

Clone NameMSMg01-465G02
Chromosome8 (Build37)
Map Location 109,293,282 - 109,293,771
singlet/doubletsinglet
Overlap geneTmco7
Upstream geneRanbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1
Downstream geneHas3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465G02.T7 (MSMg01no465_g02.b1)MSMg01-465G02.TJ (MSMg01no465_g02.g1)
ACCAG549574AG549575
length736763
length of high quality
(start - end)
490 (67 - 556)304 (68 - 371)
definitionCHROMAT_FILE: MSMg01no465_g02.b1 PHD_FILE: MSMg01no465_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:28 2005CHROMAT_FILE: MSMg01no465_g02.g1 PHD_FILE: MSMg01no465_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAGCCGCGGAATTC
TCCATTACACTACCAGGGATCACTTCTATTAACATTAACTTTTCTTTACG
CAGCTTTCCCAGAGCGAGCAAGCACACCAAGAGACAGTTACTGGTAAGAA
GACCAGCAGGGCCCCTGACTTTCCCGAGAACTTGAGCTGATTCATTCCCT
GAGTCATCTCCAGGTAAGAAATAAAACCCTCTCCACACTTCTTGCAATCC
TCAAGCCGAGGCAGGTAACCACTGCTCTGTGTACTCAGCACCTGGATGAC
AGGGCAGGAGTTTTCAACTGAACCCCGGGTTCCAGTGCCATTTCACCTCC
GGCCTACAGAAGCTGCTGCGTCAGCACAGCTGACTGACGGCAGCCACTAG
CCCTAAAGCTTGGGCAAGATGGGGCTGATCTTCTACTTGCTCAGGGTCTC
CTTATGCCTGGGGTGTCAGCCAGTGACAGAGACAGGATAGAGGCCCTTCT
TAAAGTGCCCTTTCCCCTTAGTTACGCCTAGCAGATGTACTAATAAGGTG
ATTAGGCAAGCATGGTGACAGAAACCCAAGGCTATAACTGGCTTAGAGAA
AGTGATTATTGCCTAACCAGTAACCCCGATGGCCAGGGCTTATAACTTTC
GCTTCCTCCGAGGGAGACCAATTCGGCTTGCGGTAAAATGCCACCTAAGG
CCCTTCTCTCTTGAAAATGGGTGTTACTTCGTGCCC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTATTTAGTTGAGGTTGGCCTCAGACTTCCAG
AAATCTACCCAGGCTCTTTCTCTGCCTCTTGAGGGCTGGGATTAAAGGCA
AATGCCACCTCACCTGATCCTTAGAGCTACTCAACCACATAGCTGCTTAA
TTATTTTTCTTGGAAGGATGAAAGAACTGAGAGAGGCCTATTTGTTTTGT
TTTGTTTTGTTTTTTCAGTGCTAGGTTTGAACCCATGACCTTAGCCTTCG
AGGAAAGTTTGATACCATTGAGCTAAATCCTCAGTCTCTAGTGAGAGTTT
AAATGGCTTGCTCAAAAGCTTGTGACCAAGAGGTGTGTGGTGTCAGATAC
ATGCCTGTCATCCCAGTATTCTACCGCCTGATGAATGAAGACTGTGAAAT
CCAATCCTATCTACCTATACGTAGAATCTCCTTCATATATATATAACTAT
GGACCCTCTGTCTCTTGGTATTCCTTCCCCTCGCACGTATTACGGTCTCC
CTGCTTCTGTAACTTAAGTTCTTAATCTATCCCCCCCCCCACCTTCTCTT
CATACTATCCGTATTATGCTCCCTACTCCTCTACTTTTTTTTGCTCCCAT
ATAACTTTTCGTTTTTTCGTTCGCTACTCATGACGTCTTTTCGTTTTTTT
TTCTTCTCACCCCCCCCATTTTTCTCATTATATTTCTCTTCTTTTTTTTT
TTACCCTACATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_g02.b1 MSMg01no465_g02.b1 CHROMAT_FILE:
MSMg01no465_g02.b1 PHD_FILE: MSMg01no465_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:28 2005
         (490 letters)



>mm_chr8_109293082_109293971
          Length = 890

 Score =  886 bits (458), Expect = 0.0
 Identities = 482/494 (97%), Gaps = 8/494 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatcacttctattaacattaacttttctttacgcagctttcccagagcgagcaagcaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 690 ggatcacttctattaacattaacttttctttacgcagctttcccagagtgagcaagcaca 631

                                                                       
Query: 61  ccaagagacagttactggtaagaagaccagcagggcccctgactttcccgagaacttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ccaagagacagttactggtaagaagaccagcagggcccctgactttcccgagaacttgag 571

                                                                       
Query: 121 ctgattcattccctgagtcatctccaggtaagaaataaaaccctctccacacttcttgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctgattcattccctgagtcatctccaggtaagaaataaaaccctctccacacttcttgca 511

                                                                       
Query: 181 atcctcaagccgaggcaggtaaccactgctctgtgtactcagcacctggatgacagggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atcctcaagccgaggcaggtaaccactgctctgtgtactcagcacctggatgacagggca 451

                                                                       
Query: 241 ggag----ttttcaactgaaccccgggttccagtgccatttcacctccggcctacagaag 296
           ||||        ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggaggggc----caactgaaccccgggttccagtgccatttcacctccggcctacagaag 395

                                                                       
Query: 297 ctgctgcgtcagcacagctgactgacggcagccactagccctaaagcttgggcaagatgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctgctgcgtcagcacagctgactgacggcagccactagccctaaagcttgggcaagatgg 335

                                                                       
Query: 357 ggctgatcttctacttgctcagggtctccttatgcctggggtgtcagccagtgacagaga 416
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 334 ggctgatcttctacttgctcagggtctccttatgcctggggcgccagccagtgacagaga 275

                                                                       
Query: 417 caggatagaggcccttcttaaagtgccctttccccttagttacgcctagcagatgtacta 476
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 caggatagaggcacttcttaaagtgccctttccccttagttacgcctagcagatgtacta 215

                         
Query: 477 ataaggtgattagg 490
           ||||||||||||||
Sbjct: 214 ataaggtgattagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)