BAC Information

Click to search

BAC

Clone NameMSMg01-465I05
Chromosome8 (Build37)
Map Location 48,224,100 - 48,224,382
singlet/doubletsinglet
Overlap genenone
Upstream gene4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6
Downstream geneStox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465I05.T7 (MSMg01no465_i05.b1)MSMg01-465I05.TJ (MSMg01no465_i05.g1)
ACCAG549675AG549676
length705770
length of high quality
(start - end)
---283 (73 - 355)
definitionCHROMAT_FILE: MSMg01no465_i05.b1 PHD_FILE: MSMg01no465_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:38 2005CHROMAT_FILE: MSMg01no465_i05.g1 PHD_FILE: MSMg01no465_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGAGCGCGGGGAGAAAAAAAGAACCCCCAGGAGGGGNGCGGGGCACGGC
CCCCCAGGGGGGCGCCACGGACCGCCCCCCCGCCCGCGCCCCCCACCCCC
CGCGCCCCGGGCGCACCACCCCCCGCCCGCCCGAGGCGCCGCGAAGGCCC
CGCGCGCGCACACCCGNACCCCCAAAGAAAAGAGGCACCCGGCACCGAAG
ACAGGACAGGCCGCACGGACAGCGACAAGACACCGCCAGGGAAGCGGAGG
NACGCGCGAGNCAGAGAGCCAAAAAAGACGGGAGCGCGGAAGGGAAGCCA
AAACGGGCCCGGAAACCCAAAGGACGAAACGGCGGCCCCGCGGGGGCGGG
AGAGGCCCCGNCCCCAGGGCNCGGGGGNCANAAGAGAGGCNAGGGGACGG
CGAACAACAGAGGNNAACCNNNCCACCCCCCNNCCAAAAACGCCCNNNNN
NNNNNNNNCNNNNNNNNNNNNNNNNNNGGGGNNNNNNNNNCGCCGCCAAG
GAGGGGAGNNNNNNAGCGGACCNCGGGAGGGNCGNGGNNNNNNNNNNNNN
NNNCAGCCCNNNGAGGNNNNAGGNCGGAGAGGAGGGAGGGGAGGAGAGGA
GNAGGAGAGGGGNNNNANNAGGAGGGAGAGAGGGCACGCGAGGGNNNNCC
GAGAGAGGGGGAGGGAGCGAGGGGGGNNNGCGGGGAGGCGCGGCAGNAAG
AGGAG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCCTACTTTGGTGCCATGGAAAGGCAA
CGACAAAAGAGAGTTTGCTGGGCATTTAGGAATAGCATCTAGGAGGCCTG
AGTGACCAGGCAGGAGGGAGGGCGGGTGAGCGCTGAGCCTGAGAGGGACA
AAGTTGCCCAAAGGCGCTGGGCTTGGTGGGCTTAGGGTGAGGTAAGGCCT
TGGCTTTCCTCTAAGTTAGATGGAAATGAGGGATGGAGATGATCATGGCC
TGGTTCACATTTACTTTTACTACTCTTGAGTCAGTGATGCTGCTGAACAG
AGTGGAGGGTCAAAGGTAGGAAAATTGCCAGGGGAACACAGTTATGAGAG
GCATGAGACCCACCCTGTTTGAACCACAGGAGTGCTGATATTCCAGATTT
GACCTTGTTTAGGGTAGTCACTGGAAGATTTTCCACTTCTCTCCGTGTTC
ACTCTTGCTTAACTTTTTTTCTCTTTTCTTTACCTTCCTTCCCCCTCGGC
TCTTCTTATTTCCTTCCCCTTTCTCTGGCCAATTTTTTCTCATCTTCCTT
TCTTTCTTTCTTCTCTCGTTCGCTCTCTGCATCTTCCTCTTCCCTCCATA
TGTCTACTTCCTCCTTCTCCCGTCGTTTCCCCCCCCTTCCCCATCACTCT
CTTGTTTTTTTCTTCTTTTTGCTATTTTCCGCCCCGCGGCCTCCCCCTTT
CTCCCGTTTCCTCCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_i05.g1 MSMg01no465_i05.g1 CHROMAT_FILE:
MSMg01no465_i05.g1 PHD_FILE: MSMg01no465_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:38 2005
         (283 letters)



>mm_chr8_48223900_48224582
          Length = 683

 Score =  509 bits (263), Expect = e-148
 Identities = 278/287 (96%), Gaps = 8/287 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctactttggtgccatggaaaggcaacgacaaaagagagtttgctgggcatttaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 accctactttggtgccatggaaaggcaacgacaaaagagagtttgctgggcatttaggaa 424

                                                                       
Query: 61  tagcatctaggaggcctgagtgaccaggcaggagggagggcgggtgagcgctgagcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tagcatctaggaggcctgagtgaccaggcaggagggagggcgggtgagcgctgagcctga 364

                                                                       
Query: 121 gagggacaaagttgcccaaaggcgctgggcttggtgggcttagggtgaggtaaggccttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gagggacaaagttgcccaaaggcgctgggcttggtgggcttagggtgaggtaaggccttg 304

                                                                       
Query: 181 gctttcctctaagttagatggaaatgagggatggagatgatcatggcctggttcacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gctttcctctaagttagatggaaatgagggatggagatgatcatggcctggttcacattt 244

                                                          
Query: 241 ac----ttttactactcttgagtcagtgatgctgctgaacagagtgg 283
           ||        || ||||||||||||||||||||||||||||||||||
Sbjct: 243 acaaag----acaactcttgagtcagtgatgctgctgaacagagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)