BAC Information

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BAC

Clone NameMSMg01-465L04
Chromosome8 (Build37)
Map Location 81,734,897 - 81,735,226
singlet/doubletsinglet
Overlap gene1700011L22Rik
Upstream geneTtc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340, EG666346, D630040G17Rik
Downstream geneMmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465L04.T7 (MSMg01no465_l04.b1)MSMg01-465L04.TJ (MSMg01no465_l04.g1)
ACCAG549817AG549818
length771777
length of high quality
(start - end)
222 (66 - 287)330 (71 - 400)
definitionCHROMAT_FILE: MSMg01no465_l04.b1 PHD_FILE: MSMg01no465_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:54 2005CHROMAT_FILE: MSMg01no465_l04.g1 PHD_FILE: MSMg01no465_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGTTTTCCAGAGCTACATATTCAGACCTTGTCTCAAAACAAAACC
AAAACCAAAAACAACTAGTATACTGACTATCTACCAGTGAAGTCGGAGTG
TTGCTGTGTAAATATTCTAAAGATGCAATAAGTACAGTATCATAATTCAG
ATTCTTAGGTGCTATAAATTTATTTTCTCACAGCTCTGGAAGCTAGACGT
GGAAGATCCAGGTGCTGGTAGTGTCCATTTCCAGAAACCCTTCCAGTCTT
GGTATGCAGGTGGTCACTGTCTCCCGAGGTCTCAATGCACCTTTCCTGTG
CACACATGCATCCGCGGTATGTCACATTCTTCTTAAAGGCCAAAGCCTCA
CTGTGTCTGAGGCCTGTTCTGTATGACCTCGTTTACTCTTTATTTACCTC
TTTATTTCTCATTTTTAGTTCCTGTCTTATGTATAAGCCACTATTGTCCA
TTGTTCTCCAACTCTTATTATTTTATGTGTTTTCCATTTCTACTATTTTT
TTTTGTTACCCCCCTTCTTTTTCTATTCCCCTCCCATTTTGTAGTCCCCC
CCAATCTCTTTTTTTCCTCTCCACCCACCTATCCTTACACTCTCACGAAC
TTTATTTTTAAATGCTTTCCTCCCTTATCCTACACGCAACCTTTCTTCTT
TTTTCTTTTTCGTCTCCTCTCATTAATTTTTTTGTTTCTCTCTTTTCCTC
CTCCCCCTCTTCCCTTATCTG
ATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAAGAAACGCTAAAGACTCGGTCTCTTGTC
TCGGCCCTTTCATCATCCCCCACTGATAGAAACCTTTACTATGCTTTCCC
ACTTCCAACCAGCAGGCAATCCTGGGTGTGAGTTCTCGGCTTTTCAGTCC
TACATCATGACCCTCTTCAAGTCAGGTTCCACGAACATGAATAATTCAAA
GAGAGTTTCCAGTGGAGCTGGTCACCAAGCAAATGTTTTTAACCCTAAGA
ATTTTGGCAGCCTGTCAGGAAATGGACAATTCTCAACCTGGTGGCTTTTG
CACCTTCCCCTAAAATATCAGTACCTGTTTTAAAATATTTTAAATGTGGG
GAATGGAGCCCCGTTTTGTTCTCCCCTGAGGACATATCTTTATTTCTCAG
TTCCCCCTCCGTATACTCCTATCCATCTGCATTTCCTATTTTGACCGCAC
CCGCCCCTTTTCTGTCCCGCAAGATCTCCCTTCTTCTTTCTTTATATGCC
TTTTCTCCTTTTAACTTTTTTTCCTTCTTAGCTCCCCCCTTATCTTTCCC
CCACCGTTCTCATTCTCTTCTTCGCTCTCTTTTTTTTCCCTTCTCCCCTC
TTTACTCTTTCTTATTCTTCTTTCCCTCTCTTCCTTCTATTTACTCTTTA
CCTCTCATAACATTTTTTCATTTCGTTCCGTTCTTTTCCCTGTCTATTCC
TTTACCCCTCTTCTCTTACCTATTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_l04.g1 MSMg01no465_l04.g1 CHROMAT_FILE:
MSMg01no465_l04.g1 PHD_FILE: MSMg01no465_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:54 2005
         (330 letters)



>mm_chr8_81734697_81735426
          Length = 730

 Score =  615 bits (318), Expect = e-180
 Identities = 327/330 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagaaacgctaaagactcggtctcttgtctcggccctttcatcatcccccactgataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 taagaaacgctaaagactcggtctcttgtctcggccctttcatcatcccccactgatagg 260

                                                                       
Query: 61  aacctttactatgctttcccacttccaaccagcaggcaatcctgggtgtgagttctcggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacctttactatgctttcccacttccaaccagcaggcaatcctgggtgtgagttctcggc 320

                                                                       
Query: 121 ttttcagtcctacatcatgaccctcttcaagtcaggttccacgaacatgaataattcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ttttcagtcctacatcatgaccctcttcaagtcaggttccacgaacatgaagaattcaaa 380

                                                                       
Query: 181 gagagtttccagtggagctggtcaccaagcaaatgtttttaaccctaagaattttggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagtttccagtggagctggtcaccaagcaaatgtttttaaccctaagaattttggcag 440

                                                                       
Query: 241 cctgtcaggaaatggacaattctcaacctggtggcttttgcaccttcccctaaaatatca 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctggcaggaaatggacaattctcaacctggtggcttttgcaccttcccctaaaatatca 500

                                         
Query: 301 gtacctgttttaaaatattttaaatgtggg 330
           ||||||||||||||||||||||||||||||
Sbjct: 501 gtacctgttttaaaatattttaaatgtggg 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)