BAC Information

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BAC

Clone NameMSMg01-465O23
Chromosome8 (Build37)
Map Location 60,496,031 - 60,496,281
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465O23.T7 (MSMg01no465_o23.b1)MSMg01-465O23.TJ (MSMg01no465_o23.g1)
ACCAG549998AG549999
length817835
length of high quality
(start - end)
252 (63 - 314)113 (70 - 182)
definitionCHROMAT_FILE: MSMg01no465_o23.b1 PHD_FILE: MSMg01no465_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:13 2005CHROMAT_FILE: MSMg01no465_o23.g1 PHD_FILE: MSMg01no465_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATTCCAT
AATGTACCTGAAGCTCCAGTATACTCTTAAAGCCAATGTAAATCACAGGA
AAATATTACTGTAGTCGACTGGTGGTTTGTCAATTTCAGACAGAAAAATA
AGATTGGTTTCCAGTTCCTGTTAGTCACTTTTATGCAGATTATAAAAACT
TAATTATAAGTCTCATGATTATTAAGAAATTAATGTCTCTTTTGGAACTA
TACATCTGTATTTTCTCAAGCAACAATACTGACAACTTATCTGAATCTAA
GTCTTTTACATTATTTATTCTATTTGCCAAATAATTAGACTCATTCTTGT
ATGTAAATATCGCGCCCCTCATTATACAATTGAAAAACATCCATTTTAGG
TTAAATCTCCNAAGCACTTTTAAAGGGTAAATTTATTTGTTTTATATTTT
AATGGACCACCTGAATTTTATCTATTGTATTCCCTGGAACCCTTTTCCCC
CACCAGAATTTATCAATTTCTCCTTCTCTTTTTTTCTCCTTTCTTTTCCT
CCCCTCTTACTCTTAATCATTTTTTTCCATCTTAATTCCTTTTCCTTCTT
CTCTTTCTTCTCTCTCCTCCTACCTCATCATTTACTTTATTCTTTTTTAC
TTTTTTTCTTAACCATCCTATTCTCCTCCCCCCCTCCCCCTCCCCTTTCT
TTTCTTTTCCATTCTTCTTTCACTACTTTTTCCCCACCTCCCTCCTATCT
ATATCCCTTACTTTTGTCTTCCACCCCTTTTCTTTCTTTTCCTCAAACCC
ACCTCCCTTCTTTTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCATTCTTTCCTTGTTATTTTTTTAATTT
TTTTTTTGAGATTTCAATTGTGCCTCTTACTATAGTAGCTTCCATATTTG
GACACAGTAGGGAGATGTTTAGGTGTCATTGTGTGGAGCCATGGGCTTCC
ATCAAGGAGCAAGCTGGTGGCTTTAATTGGTGGTGGGTTTTTGGAAANTT
TTATATTCGCTGGCTTGCCTGCCTTTTTTGTTCTTTTCTTTTTTCTTTTT
TTCTTCGCCCCCCTTTTTCCCCTTTTTTCTTTTTTCCCCCCTCTTCCCCT
TCTTTCCCCCGTGTTGGGTCCCTCCGAGCCTCCTTCTCTTTTTTTTTCCT
CTCTTCATTTCTCTCCCCTTTTTTTTTTCTCTTTTCGCTCTGTCGTCTCT
CCGTTTTTCTCGGTTGCCTTTGTCCTTTGGCGCTTGTTTGCCTTGTCCCT
CTTTGGCCCGAGGCCGACACGACGCGCCCTCGGACGCACTGTCTTTGCTT
TTTTTCTTTTCGCCCCAACTGTCCTCTCCGCGGTCTTTGCCGTACGCTGT
TTTTTCTTCCTCCCATGGCACGTTCTATTCTCCTCTTACACCCCGGTCAT
TCTCGACTCATGTCGTGCGGTGTACCCACACTATTCTTCACTTCTCTTCT
TATCTCTTCCTTTCATNCCTCCGCCCCACTGCCTACATTCAGTCCCCTTC
TCCTAGTTCTCTACCTTTGTTTTNNATTTTTTATCTTTCTGCCCCCTCCC
TCCGACCGATTTTGNATCTCTTCTTCATTACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_o23.b1 MSMg01no465_o23.b1 CHROMAT_FILE:
MSMg01no465_o23.b1 PHD_FILE: MSMg01no465_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:13 2005
         (252 letters)



>mm_chr8_60495831_60496481
          Length = 651

 Score =  449 bits (232), Expect = e-131
 Identities = 247/252 (98%), Gaps = 1/252 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctccagtatactcttaaagccaatgtaaatcacaggaaaatattactgtagtcgactgg 60
           |||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 451 gctccaatgtactcttaaagccaatgtaaatcacaggaaaatattactggagt-gactgg 393

                                                                       
Query: 61  tggtttgtcaatttcagacagaaaaataagattggtttccagttcctgttagtcactttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tggtttgtcaatttcagacagaaaaataagattggtttccagttcctgttagtcactttt 333

                                                                       
Query: 121 atgcagattataaaaacttaattataagtctcatgattattaagaaattaatgtctcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atgcagattataaaaacttaattataagtctcatgattattaagaaattaatgtctcttt 273

                                                                       
Query: 181 tggaactatacatctgtattttctcaagcaacaatactgacaacttatctgaatctaagt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tggaacaatacatctgtattttctcaagcaacaatactgacaacttatctgaatctaagt 213

                       
Query: 241 cttttacattat 252
           ||||||||||||
Sbjct: 212 cttttacattat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 651
Length adjustment: 9
Effective length of query: 243
Effective length of database: 642
Effective search space:   156006
Effective search space used:   156006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)