BAC Information

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BAC

Clone NameMSMg01-465O24
Chromosome8 (Build37)
Map Location 70,687,619 - 70,687,863
singlet/doubletsinglet
Overlap genenone
Upstream geneNat1, Nat2, LOC100041265, Nat3, Psd3
Downstream geneSh2d4a, LOC665510, 4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465O24.T7 (MSMg01no465_o24.b1)MSMg01-465O24.TJ (MSMg01no465_o24.g1)
ACCAG550000AG550001
length783748
length of high quality
(start - end)
249 (64 - 312)83 (66 - 148)
definitionCHROMAT_FILE: MSMg01no465_o24.b1 PHD_FILE: MSMg01no465_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:13 2005CHROMAT_FILE: MSMg01no465_o24.g1 PHD_FILE: MSMg01no465_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCT
GGTTTCCCTATGCAATGCTTGGATTGTAGACATGAGCTGCCATGCCTAGC
CTACATATCCCATCCTAAAAACAAAGATAGAAAGTTGCATCAAAGCAATG
ATTTCAATTAGCAGAGCACTTAATGATGAGTGAGCCAGGATTCAATGTGT
TACTATTAATAAAATCAAACCAAAACCCAGAATCATTTTAAAACTTGTCT
TAGTTCTTTCCAGTTTTTATACCATGTGATCATATTCACCCACCCACCCA
TTCCCAACAACTTCCTCTAGATTCACTCACTTTTCCCTACCCACTCAATT
TGACATTCCTTGTTTGTACCTTAAATCCATCAAGACCAATGCATGCATTG
CATGTATATGCACCACGCGCAGTCAGTGTCCTTGGAGGAGGTTAGAAGAG
GATGTTGGACCCGCATAAGCAGGAGTTACCGATGCTTGCGAGCATCTGAA
CTATGGTCCCTTTAAAAAGCAAGTGGTCTTAACTATTGTTGCGGTTTTCC
AAAAATCCCTGGTTCAATTATTGTGGGACCATGCCCTTATTTTCCCCCCA
TGCGTTCCCAACCCGCTTAATATTTGAATTTCAGCCACTTCTCTGTTTTT
TTATTTTGTTCTCTTATACCCGGTTTCTTTTATTACACCTCGTCTTTTTT
TATTCCCTTCTGTCCCGCATATACTACTTGTCTTTTATCTCTTTTTTCTC
ATTATTTTCATTCATTTTTTTCTTTCTTTCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCACACGAGGGCGCCAGTGTGCACAACAGCAGGCCT
CAGACTACTAGATCCCACCAAATGAACACATTGCCTCCAAAGCATTTCCT
TTTCAAAGAACTGAAAGTTTCACCCTNGATAGCCGTGATTATTTCGGNNN
ACTCCCANGNAGGGTGCCNGGGGGGGGGCGTGGCTGAGATCGTGGGGGGG
GAGGGGGGCGAGGGCCGANNANATTATCTAAANNNNNTNNNNNNNNNNNN
NNTTTTTTTNNNNNNNNNNTNTNNNANNTNAAATATTTTTTTTTTTATTA
TTTTTTATATTTTTTTTTATTTTTTTTTTAAAAACTANNNNNNNNNNNNN
NNNTTNNNNTTTNNNNNNNNNNNNNNNAANNNNANNNNNNNNNNANNNNA
NANNNNNNNNTNNANANNAANAAAATAAAAAAANANAAAATTTATTTTTT
AAAANTTTATNTANAAATTTTATTATATTTTTTATTTTATTTATTATNNN
NNANTTATNNTTTTATATTTCTNNNNNTTCTTTTTTTTTTTTTTCATNTT
TAAAACCATTATTTATATTTTTATTTTANATAACCCCCCCCACTTCCTCC
CCCCCACTTTTACTCTTCCTTCCCTCTCTTCCCTCCCTTCCTTTCCTCTC
TTCCTCACCCTTTTTCTCCTTCATCTTCTCTCTTTTTCTTTCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_o24.b1 MSMg01no465_o24.b1 CHROMAT_FILE:
MSMg01no465_o24.b1 PHD_FILE: MSMg01no465_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:13 2005
         (249 letters)



>mm_chr8_70687415_70688063
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   cttggattgtagacatgagctgccatgcctagcctacatatcccatcctaaaaacaaaga 64
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 449 cttggattgtagacatgagctgccatgcctagcctacatagcccatccaaaaaacaaaga 390

                                                                       
Query: 65  tagaaagttgcatcaaagcaatgatttcaattagcagagcacttaatgatgagtgagcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tagaaagttgcatcaaagcaatgatttcaattagcagagcacttaatgatgagtgagcca 330

                                                                       
Query: 125 ggattcaatgtgttactattaataaaatcaaaccaaaacccagaatcattttaaaacttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggattcaatgtgttactattaataaaatcaaaccaaaacccagaatcattttaaaacttg 270

                                                                       
Query: 185 tcttagttctttccagtttttataccatgtgatcatattcacccacccacccattcccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcttagttctttccagtttttataccatgtgatcatattcacccacccacccattcccaa 210

                
Query: 245 caact 249
           |||||
Sbjct: 209 caact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)