BAC Information

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BAC

Clone NameMSMg01-466C02
Chromosome8 (Build37)
Map Location 37,370,489 - 37,370,765
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1
Downstream geneEG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466C02.T7 (MSMg01no466_c02.b1)MSMg01-466C02.TJ (MSMg01no466_c02.g1)
ACCAG550148AG550149
length833790
length of high quality
(start - end)
64 (42 - 105)280 (78 - 357)
definitionCHROMAT_FILE: MSMg01no466_c02.b1 PHD_FILE: MSMg01no466_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:30 2005CHROMAT_FILE: MSMg01no466_c02.g1 PHD_FILE: MSMg01no466_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATAATTTGCGGCGCTAAACGACTCCTATTTCGAGAAATCCGCGGAA
TTCTAGCTGTTCCCCTTACCTATCCTGGTTTTTTTGTTTTGTTTTGTTTT
TTGTTTTTTTGTTTTTTGGCCGGATGGTACGAGGAGTGAGAGACTCCCCT
CGCCTGCAGATTGCGTGGATACCCGTAGTGTGGTGAGGTAGTTGTGTGAG
CACTACCGACGGAGAGCCCCAGAGCCGCGCGCCCGCCCGTGTGTCCTCTG
TTATAGAGCTTCTAATTTATAATAGTTTAACCATAATCTATCTTCCGGTA
TATCTGACGTCGACTATTTCTGACTTCTTCAATATTTTTTTTTTTCCTTA
AATTCCCTGTATGTCCGCCCTCCTCCGGGAATAAACCACCGTTTACTTCT
TCAAACATTCTTCTCACTTCCCTTTTTTTTTATTTCTTCCCCCCGCCCAC
CCCCTAGCATTTTCCCTTCTCCCCCCTCTTCAATTCTCTTCCTCCTTTTC
ATATCCCCCTACTAATTAATTTTTCTTTTCATACCCTTCCTATTTCTTTT
CCCACTCCCTCCCACCCTCCTATACATCTACCCCCCCAATCCTTCCCTCA
TTATGCTTTTCTTCTCTCGCCCTTCATTTCCTTATTCTACTCATTTATTT
CTTTTCTCGTCCCCTATCCCCACCCCCCACCCTCTTCTTACCACTCCCCC
CCCTATCCCCCACTTCCTTCTTTCCTCCCCCCCCTCTCCCCCTTCTCCCC
CCCTCCTTTTAACTCCCCCTCTCCTCTCATACACCCTTATTTTCCCCTTT
TCATTTTCTTCTCCCCCTCCCCCTCCTTTTTCC
CTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTACTCATTTCTTTGTTTACA
ATTCTTTTGAAAATTTGCTTTTTGTTTTCTATAAAGAGATTTGAAAACAG
CTGGGTTCCGCTGGATCAAGGGTACAAGGAAGACCGGGCATTTGCTCAAA
CAGGCATATGGTGGGTTTGTAATGCCTCTGAGTGAGTTTTAAAGTTACCA
GAGATGAGAAGGGTAACCAAAGCTTCTAGAACCAAGGAAAACTACTCCAG
AAGCTCATTTTTATAAATGCTATTGTCTTATATAACCCGCTGGAAGACAC
CCAGCTCTTCCTTGCAAGATCGCCTGTGAGTCAATTTGTCATTTGATATT
TTGTAGAGTTTGCAGTAAACTGAAATTCGGCGAATTTTACTAAACTTTTA
TGACTATCGATGCTGTACTTTCGCCATTTGTGAAAAGATTCTATAATGCT
CTCCTGTCATCTTTCGTTTCTTACCTTTTGTGTTTTTCCGTTATAAATGA
ATGAGCCTTTTCCCTTCTATACCCTTATTTCCCTTTTTATGTTCGCCTAC
TTTTCTTTTTTTATTTCCTATTTACTTATTCGCCTGTTCATATTTCCCTC
CTTAACCACCCCTTTTCTTATACACCCTCGCCTTCTCCTTCCCAATTCTT
TATACTCTTTTGACAATCTCACCACTATTTTCACATATCCTCTTTTATTT
ACACATTCTTCTCTCTAAAACACCCAACAATTATTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_c02.g1 MSMg01no466_c02.g1 CHROMAT_FILE:
MSMg01no466_c02.g1 PHD_FILE: MSMg01no466_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:30 2005
         (280 letters)



>mm_chr8_37370289_37370968
          Length = 680

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttactcatttctttgtttacaattcttttgaaaatttgctttttgttttctataaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttactcatttctttgtttacaattcttttgaaaatttgctttttgttttctataaaga 260

                                                                       
Query: 61  gatttgaaaacagctgggttccgctggatcaagggtacaaggaagaccgggcatttgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttgaaaacagctgggttccgctggatcaagggtacaaggaagaccgggcatttgctc 320

                                                                       
Query: 121 aaacaggcatatggtgggtttgtaatgcctctgagtgagttttaaagttaccagagatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacaggcatatggtgggtttgtaatgcctctgagtgagttttaaagttaccagagatga 380

                                                                       
Query: 181 gaagggtaaccaaagcttctagaaccaaggaaaactactccagaagctcatttttataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagggtaaccaaagcttctagaaccaaggaaaactactccagaagctcatttttataaa 440

                                                
Query: 241 tgctattgtcttatataacccgctggaagacacccag 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctattgtcttatataacccgctggaagacacccag 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)