BAC Information

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BAC

Clone NameMSMg01-466D16
Chromosome8 (Build37)
Map Location 103,680,255 - 103,853,166
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042078, LOC100042086, LOC100042092, LOC384895
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466D16.T7 (MSMg01no466_d16.b1)MSMg01-466D16.TJ (MSMg01no466_d16.g1)
ACCAG550224AG550225
length745749
length of high quality
(start - end)		498 (58 - 555)424 (85 - 508)
definitionCHROMAT_FILE: MSMg01no466_d16.b1 PHD_FILE: MSMg01no466_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:38 2005CHROMAT_FILE: MSMg01no466_d16.g1 PHD_FILE: MSMg01no466_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,680,255 - 103,680,738)(103,852,743 - 103,853,166)
sequence
TTTAATAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAAAT
CCGCGGAATTCTCTCATTTCCCAAGTTGAAAATATCTTCCAGGTCCTTTC
CTCCAAGCTGATCAATACTGACTACACAGTACACTGTCCACTCTAAATTT
ATTCCGGTGATTTGTCTTAGCTCTGAGTGCCGCTATGGTTAATTGCTAAT
CCATATTCACTGGGCCTCACAAATGAGAGCATATAGTGTGGAGATACTTC
ACATGCTTTCTCATCTACTGTGGAAAGTCTCAAATTATCCTCTTCTTTTG
CAGTGGCTTGATTCCCTTATATTGTTCAAATAAAAAAAAATAAGACAATT
ACTGCTTCATATTATCAAATAATTTGCACGGTGATGCTCAGCAGGTAATG
ACTTCATTAAAAATAGCAATGTAATGTAAATTGCAACCATATACCAATTC
AATTGCTTTAATTGGACTGTTAAAGATATCTTTTCTGCTATGAATGAATT
TGTGTTGCTCAAAACCCAAACTTGAACATTGAAAGCATATTTCTCTGGAA
TATCCCTTTAGTTCTATTTGAATAACCTCTAAATTAATGTGAGGTATGAC
ATTCCAGGTTTAATTATGAACTCCAGCATCCCTAATGGAAAGATTACTAG
TGTGTGCCCAAATATTCCTATTTAAAATTAATTTTGGAATTTGCCTTAAC
AAATTTCAAAAAGCAAGGACTTGGTTTTTTTTTGTTTAAAAAACC

AAAACCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGGGCCACAAAG
GAAGATTTTTATCTTGGTATAAACTTGGCTCTGTGATTTGCTAATCAACT
TGAAACTGATAAATGACTACATCAATTATTGCTTGTTAATGATTATTGAA
TCATCATTTAAACAAAGCATCCATACAGACGGTTTTCTAGGAAATCTCAC
TTTCAAATTTTTTTTATAAGAGAATTATTTATGCTTGAATTTATGTACAC
ACATATGCTCTTGTGAGCTTATGTATATTATGTGCACACATATGCTCTAG
AAGGTCAAAGGGTATAAGACCCTGGAGCTGAATTATATTCAACTGGGAAC
CAAGCTTAGCTCTCAGCAAGAACACCAGGTTCCCTTGACCACTCAGCCAT
CTGTCTAGGTTCACAACCGCTTTTTGACATTCCGAACAGAGTTCTTTTCT
TTAATTTAGAGAAACCTCTGTTTAAGTGTGAACAGTTTATAGTACTGACT
TCTATGGGAAATTTAATAATTGTAAAGGAAAATATGTGTGATTACATTCC
TGATTCCCAATCCGCCTATATAAATTTTTCCTCTTAAAAGCTTTTAATGG
TATTTTTTTTTGGGCGGCGGGGAGAGAGCTTTCCCCCTATCTATATATTA
TCTTCTCTATTATTTATTATTTCCTCTTACCATCCATCTACTACCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_d16.b1 MSMg01no466_d16.b1 CHROMAT_FILE:
MSMg01no466_d16.b1 PHD_FILE: MSMg01no466_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:38 2005
         (498 letters)



>mm_chr8_103680041_103680938
          Length = 898

 Score =  890 bits (460), Expect = 0.0
 Identities = 478/484 (98%)
 Strand = Plus / Plus

                                                                       
Query: 15  caagttgaaaatatcttccaggtcctttcctccaagctgatcaatactgactacacagta 74
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 215 caagttgaaaatatcttccaggtcctttcctccaagctgatcaatgctgactacacagta 274

                                                                       
Query: 75  cactgtccactctaaatttattccggtgatttgtcttagctctgagtgccgctatggtta 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cactgtccactctaaatttattccggtgatttgtcttagctctgagtgccgctatggtta 334

                                                                       
Query: 135 attgctaatccatattcactgggcctcacaaatgagagcatatagtgtggagatacttca 194
           |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 attggtaatctatattcactgggcctcacaaatgagagcatatagtgtggagatacttca 394

                                                                       
Query: 195 catgctttctcatctactgtggaaagtctcaaattatcctcttcttttgcagtggcttga 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 catgctttctcatctactgtggaaagtctcaaattatcctcttcttttgcagtggcttga 454

                                                                       
Query: 255 ttcccttatattgttcaaataaaaaaaaataagacaattactgcttcatattatcaaata 314
           |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 455 ttcccttaaattgttcaaataaaaatatataagacaattactgcttcatattatcaaata 514

                                                                       
Query: 315 atttgcacggtgatgctcagcaggtaatgacttcattaaaaatagcaatgtaatgtaaat 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atttgcacggtgatgctcagcaggtaatgacttcattaaaaatagcaatgtaatgtaaat 574

                                                                       
Query: 375 tgcaaccatataccaattcaattgctttaattggactgttaaagatatcttttctgctat 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgcaaccatataccaattcaattgctttaattggactgttaaagatatcttttctgctat 634

                                                                       
Query: 435 gaatgaatttgtgttgctcaaaacccaaacttgaacattgaaagcatatttctctggaat 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatgaatttgtgttgctcaaaacccaaacttgaacattgaaagcatatttctctggaat 694

               
Query: 495 atcc 498
           ||||
Sbjct: 695 atcc 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no466_d16.g1 MSMg01no466_d16.g1 CHROMAT_FILE:
MSMg01no466_d16.g1 PHD_FILE: MSMg01no466_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:38 2005
         (424 letters)



>mm_chr8_103852659_103853482
          Length = 824

 Score =  804 bits (416), Expect = 0.0
 Identities = 422/424 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtgggccacaaaggaagatttttatcttggtataaacttggctctgtgatttgctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcagtgggccacaaaggaagatttttatcttggtataaacttggctctgtgatttgctaa 449

                                                                       
Query: 61  tcaacttgaaactgataaatgactacatcaattattgcttgttaatgattattgaatcat 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 448 tcaacttgaaactgataaatgactacatcaattactgcttgttaatgattattgaatcat 389

                                                                       
Query: 121 catttaaacaaagcatccatacagacggttttctaggaaatctcactttcaaattttttt 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 388 catttaaacaaagcatccatatagacggttttctaggaaatctcactttcaaattttttt 329

                                                                       
Query: 181 tataagagaattatttatgcttgaatttatgtacacacatatgctcttgtgagcttatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tataagagaattatttatgcttgaatttatgtacacacatatgctcttgtgagcttatgt 269

                                                                       
Query: 241 atattatgtgcacacatatgctctagaaggtcaaagggtataagaccctggagctgaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atattatgtgcacacatatgctctagaaggtcaaagggtataagaccctggagctgaatt 209

                                                                       
Query: 301 atattcaactgggaaccaagcttagctctcagcaagaacaccaggttcccttgaccactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atattcaactgggaaccaagcttagctctcagcaagaacaccaggttcccttgaccactc 149

                                                                       
Query: 361 agccatctgtctaggttcacaaccgctttttgacattccgaacagagttcttttctttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 agccatctgtctaggttcacaaccgctttttgacattccgaacagagttcttttctttaa 89

               
Query: 421 ttta 424
           ||||
Sbjct: 88  ttta 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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