BAC Information

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BAC

Clone NameMSMg01-466H03
Chromosome8 (Build37)
Map Location 105,043,360 - 105,043,728
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466H03.T7 (MSMg01no466_h03.b1)MSMg01-466H03.TJ (MSMg01no466_h03.g1)
ACCAG550390AG550391
length1,507789
length of high quality
(start - end)
---369 (78 - 446)
definitionCHROMAT_FILE: MSMg01no466_h03.b1 PHD_FILE: MSMg01no466_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:56 2005CHROMAT_FILE: MSMg01no466_h03.g1 PHD_FILE: MSMg01no466_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAGATTAAGTCCTTACAATACTCAATGCGAGNGTNTTATACCCACCAGG
CATCGCTTTCTCTTCCACACTCCACATGACTAGTAACCCGGACGTCCCTC
CTCTCCCCCCCCCTCTTCTCTCATTTCAAGCGATCCCAATATAATAATTA
CCCATCCTCTACCGTCTACGCACCCTCGCCAGACACCGACAACAAGATAT
CTCACCCTCCTCTCCTTCGCCTCCCCATACTCAACCTNATCCTGATCAAA
TCACAACTCATAATCCACGTTCTCATATCTATTATATTTCTCTTATTATA
TAACAATAAATACAGACACTTGCTCCTTGTGCTTATATCTGAATATCTCT
CTTACTCTCGCTACCCTATGTTATGCGGGNAGCACGCCCCTCTCCTCTTT
CCGCTCCTCTATCTCCCTCTCTCACGTCCCTAATCTCGTGCCATATATAT
TNTGTCTCTCTTTCTCTTATCGCATACAATCTCTTTGAGTCATCATTCCT
TAAACAACATAGCTCGTTCATATTTTCAATTGTATTATTATTNTACGATT
ATTACCTCAAGTTATGTATTTATTCCTCTGGAGTTATGTACTTAGTTACT
TATTCTCGCTTTCTGCTTTCTATACCTCATCACTTTACCGTTCCTTATTA
TACCGCACATACTCTATCTCTCTTCTACCCCCTCCCCCTACTCCATTCCA
TCTCTTACCTAACACTCCACATTCTCCTACTATACATCTTATATCTCCTA
CTATCTCGCTATCTCCATCTTACCACAAATAAAATCTCACCTCCAATTAT
CGCCACGATCCAGGTGTGTCCATATATCTCTAGTCAGACTCATGCTATAC
CAATCCACACACTCACTTCATGTGTACCTCCGCACTCTCTAAGCAACTGC
ATAATATATTTCCTACTCTACCCACACACACTTACAATAATATCTTCTTA
CTCGCTCCTTACTCATTTTATCTCTACTATCCAACTATATTTATATCCCG
TCTCACGATCGCGCTCTCCATTCTACAACTCCGGCTTATTCGACCCACTG
TGTATATTCTATGTCCTATACTTTCAACGCTGCAGACCGCACCCGCCACA
ATGTNTGTCTTGTTCTATCGACCTCGACTCTACTATCCATACACTAAATC
TCTAGACTGAAGGACTTATGACTCATGCTAACCNTCGTGAGACATCACGA
TTTGCATCTCATCTGCTCTCTCCGTACATATCTCNATCACCTCGTGATCT
ACGGCTCTCCTCACTTGTTCCGTGCACGTCTCTCTCATCTTCCACGATCA
TCTCACCAATGTACTCACTCCATCTGTATTGTTATACACTACTTCATCGC
TCTATCTCTACATTATACGATGTACATCTATANCTCTCTCCTCACACTCA
TTTCCAGCAACAAATACTAATAATCATCTATCTCAAATCATATCTCGCCA
NTCATAGTATCGACATTCTCGTATATACGANCTCACTCTCTGCTCTCCTA
TTCGCAG
CTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAACAATAGGAGCTTAATGG
GTTTTCTTATGCACAGTGTCCAACTACATAGTTCACTACAAGATGGCTAT
ATTCTGCACAAAATTTATATTACTTTTGACTCTTCTATTACAAAGAAATA
GCAAACCTTTATTTAAGAACTTAGCCTTTTCAGGATTCTTACTGTTGGGA
TTCAAAGCAAAGTAATTTTGCTACCAAAATGTCTCTTTTATTATCTGTAT
TCTGATCCATCTGGTATAAAGATGGGGGAGTGTTTAGGATTGACCTTTTG
CTTGGCGTATTAAATCATTGGCCATTTTTTCCAATATATTTGCACAAAAA
GGACTAATGGATAGGTTGAGATACATCTTGATATTATCACTTGGATAGTC
AAAGAAGTAATTATAATACCACTGTTGGAAGAAACACAATGTGAGTCACT
GGATAAAAGCGATTTATTTGCTTTTTTTTTTTCCTTATACAGCATATTTT
GGTTGGTCCCATGATTAATTTACCATTTAACCTACATTGCACTCGAGGTA
GTCCCTCTTTTTATTATAGCATTACTTATTTCTACCCGGTGTGATCCCAT
ATTCCCCCCTTCTATACCTATGTGCATTATCCCCTACCTCCCCCTTGTTT
GTACTATTACCTCTTCTGCATATCCCTTTACCTATCTCTTTTCCTTTTAA
ACTTATTCCCTCTCTCCTCTCTTCCGAGCGCTAACTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_h03.g1 MSMg01no466_h03.g1 CHROMAT_FILE:
MSMg01no466_h03.g1 PHD_FILE: MSMg01no466_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:56 2005
         (369 letters)



>mm_chr8_105043160_105043928
          Length = 769

 Score =  698 bits (361), Expect = 0.0
 Identities = 367/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaacaataggagcttaatgggttttcttatgcacagtgtccaactacatagttcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaacaataggagcttaatgggttttcttatgcacagtgtccaactacatagttcact 260

                                                                       
Query: 61  acaagatggctatattctgcacaaaatttatattacttttgactcttctattacaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagatggctatattctgcacaaaatttatattacttttgactcttctattacaaagaa 320

                                                                       
Query: 121 atagcaaacctttatttaagaacttagccttttcaggattcttactgttgggattcaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagcaaacctttatttaagaacttagccttttcaggattcttactgttgggattcaaag 380

                                                                       
Query: 181 caaagtaattttgctaccaaaatgtctcttttattatctgtattctgatccatctggtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagtaattttgctaccaaaatgtctcttttattatctgtattctgatccatctggtat 440

                                                                       
Query: 241 aaagatgggggagtgtttaggattgaccttttgcttggcgtattaaatcattggccattt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 aaagatgggggagtgtttaggattgaccttttgcttggcgtattaaatcattggtcattt 500

                                                                       
Query: 301 tttccaatatatttgcacaaaaaggactaatggataggttgagatacatcttgatattat 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tttccaatatatttgcacaaaaaggactaatggaaaggttgagatacatcttgatattat 560

                    
Query: 361 cacttggat 369
           |||||||||
Sbjct: 561 cacttggat 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)