BAC Information

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BAC

Clone NameMSMg01-467C20
Chromosome8 (Build37)
Map Location 34,797,814 - 35,000,199
singlet/doubletdoublet
Overlap geneGsr, Gtf2e2, Rbpms
Upstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6
Downstream geneLOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467C20.T7 (MSMg01no467_c20.b1)MSMg01-467C20.TJ (MSMg01no467_c20.g1)
ACCAG550949AG550950
length737769
length of high quality
(start - end)		292 (316 - 607)384 (67 - 450)
definitionCHROMAT_FILE: MSMg01no467_c20.b1 PHD_FILE: MSMg01no467_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:57 2005CHROMAT_FILE: MSMg01no467_c20.g1 PHD_FILE: MSMg01no467_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,797,814 - 34,798,105)(34,999,816 - 35,000,199)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAGAATCCGCGGAATTCAGGT
CTTTTTGCTTGCCTAGCAAGTTCTTTACCTACAGAACTATCTTCCTAACT
TCACGTTTCAATTATTATTTTTTTAAAGATTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTGTGGA
ACACTGTAGCTGTCTTCAGACACCCCAGAAGAGGACATCAGATCTCATTA
CAGATGGCTGTGAGCCACTATGTGGTTGCTGGGATTTGAACTCCGGACCT
TCAGAAGAGTATTCAGGACTCTTAACCGCTGAGCCATCTCTCCAGCTCCA
CCCCCCTTTTTTCCCCTACCTTTCAATTCTTATCCTCCCACATCTACTTC
CCAGGTTCTGGGGTGGCAGGCATACCCTGATGATGGGATCAAACCCAGGG
CTTCAGCATGCCGGACAGGCGTTCTGCCAACCTACCTGCCTTCCCAGCTT
ACAGGAAGGTCCATTGTCATCTTATTAATAGTTCAGATAGGCCTGTTGAA
TGCAGGTTGAATGACTACCGTGTGCCAGGTCATGACAGCACATTGCTCAT
CTAGTCAACCTTGCCAGTAACACGGGTGAGGAAGCCAGGGAACTAGGTCA
GTATATGACTCGCCAAGCTGGCACAGGAGTCTGGCCAACTCACTACTGCG
GTTTTGCGGCCAAGTTGAACTCATATTTGCAGTATAG

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTTACTTTTAAAGATGTATCTCCTGTTAGGATG
CTGTGTAAACTGCTGAAGTGTAAAGATGAAGGCGACCTTTTTCCTTTCTG
GCAGGGGCAATGGAAAGAGGTGCTGTGTGTCAATGGTAGAGTATGCGTTC
AATCCGCTGTGGCAGGATAAGTCCTTTGTGTTATTTATTTATTTTTTAAG
CATATTACAGTACTTTTAGATCTTGCACTTTAAAAGTCTCAATCAGTACG
TACATGTGAGAGCTGTGTCGGGCGGGGTGGATGGGAATTGAGCTTTGGTT
TGTTCTCGGCTCCAGATGACTGTGTTTCGGNGGAGGAGAGCGAGCCCCTG
ACCCTTGGTTCCACTGCTTGGCACATGGTTTTCACCGAGGCAAGAGGGAC
AACTCAGCTTTCAATGGTCTGCTCCCAATTGCTCTTCTTTAGCTTGAACT
AACTCTACAGTTCTAATAAACTTGACACCGCCCATATTGTATCCTTTCTC
TTCGTCCTGAGATAATCCGGGTTTAACTCTCTCTTTTCATTGGTCCCCTG
TCTTTCACCTTGCCTTTTTTACGCCTTGTTTAAAACTTCCTTTTCGTCCC
TTATAATCACCCATTATTTCCCCCTCTCCTCTTTCTATTTACTCTCTTCT
CCCCCCCCCTTTCACTCTTTGCCTCCCTTTCATAACTTTTTTTCCTTATA
TTCACACCCCTTCTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_c20.b1 MSMg01no467_c20.b1 CHROMAT_FILE:
MSMg01no467_c20.b1 PHD_FILE: MSMg01no467_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:57 2005
         (292 letters)



>mm_chr8_34797614_34798305
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggactcttaaccgctgagccatctctccagctccaccccccttttttcccctacctttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggactcttaaccgctgagccatctctccagctccaccccccttttttcccctacctttca 260

                                                                       
Query: 61  attcttatcctcccacatctacttcccaggttctggggtggcaggcataccctgatgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcttatcctcccacatctacttcccaggttctggggtggcaggcataccctgatgatg 320

                                                                       
Query: 121 ggatcaaacccagggcttcagcatgccggacaggcgttctgccaacctacctgccttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatcaaacccagggcttcagcatgccggacaggcgttctgccaacctacctgccttccc 380

                                                                       
Query: 181 agcttacaggaaggtccattgtcatcttattaatagttcagataggcctgttgaatgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttacaggaaggtccattgtcatcttattaatagttcagataggcctgttgaatgcag 440

                                                               
Query: 241 gttgaatgactaccgtgtgccaggtcatgacagcacattgctcatctagtca 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgaatgactaccgtgtgccaggtcatgacagcacattgctcatctagtca 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no467_c20.g1 MSMg01no467_c20.g1 CHROMAT_FILE:
MSMg01no467_c20.g1 PHD_FILE: MSMg01no467_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:57 2005
         (384 letters)



>mm_chr8_34999616_35000399
          Length = 784

 Score =  698 bits (361), Expect = 0.0
 Identities = 378/384 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttacttttaaagatgtatctcctgttaggatgctgtgtaaactgctgaagtgtaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agttacttttaaagatgtatctcctgttaggatgctgtgtaaactgctgaagtgtaaaga 525

                                                                       
Query: 61  tgaaggcgacctttttcctttctggcaggggcaatggaaagaggtgctgtgtgtcaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tgaaggcgacctttttcctttctggcaggggcaatggaaagaggtgctgtgtgtcaatgg 465

                                                                       
Query: 121 tagagtatgcgttcaatccgctgtggcaggataagtcctttgtgttatttatttattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tagagtatgcgttcaatccgctgtggcaggataagtcctttgtgttatttatttattttt 405

                                                                       
Query: 181 taagcatattacagtacttttagatcttgcactttaaaagtctcaatcagtacgtacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 taagcatattacagtacttttagatcttgcactttaaaagtctcaatcagtacgtacatg 345

                                                                       
Query: 241 tgagagctgtgtcgggcggggtggatgggaattgagctttggtttgttctcggctccaga 300
           ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgatagctgtggcgggcggggtggatgggaattgagctttggtttgttctcggctccaga 285

                                                                       
Query: 301 tgactgtgtttcggnggaggagagcgagcccctgacccttggttccactgcttggcacat 360
           |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 284 tgactgtgtttcggtggaggagagcgagcccctgacccttggttttactgcttggcacat 225

                                   
Query: 361 ggttttcaccgaggcaagagggac 384
           |||||||||||||| |||||||||
Sbjct: 224 ggttttcaccgagggaagagggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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