BAC Information

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BAC

Clone NameMSMg01-467D04
Chromosome8 (Build37)
Map Location 91,914,991 - 92,093,084
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
Downstream geneTox3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467D04.T7 (MSMg01no467_d04.b1)MSMg01-467D04.TJ (MSMg01no467_d04.g1)
ACCAG550965AG550966
length732736
length of high quality
(start - end)		370 (74 - 443)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no467_d04.b1 PHD_FILE: MSMg01no467_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:59 2005CHROMAT_FILE: MSMg01no467_d04.g1 PHD_FILE: MSMg01no467_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,092,715 - 92,093,084)(91,914,991 - 91,915,233)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGG
AATTCCCTGTCTTTGACCTTGAATGGGGACGCTGGGATGGTTTGTTTTAA
CACTGATGCATGGAAAATGAAGCCCCGCCCCCCACACCCTCTTAATGTTA
GAAAAACTCCTATGTAAATGATGGACTGCCTTATCTTGATACCATTTGTC
TTAACTTCGCTTCCTCTCACTTCAGTCATTTAATTTGTACGGCTTCCAAA
TCAGAGTGACTGTCATCTATTAGTCTCCTTGGTGACAGAGGGCAGGGGGC
TGTTGTATTGGAGTTAATAAAGCATAAACACAAGCCTAATTATTGGGAAG
ATAAACCACGCTGGCAGGGTTTTGTCCTCTAGGGTTGGAAGTCTTGGTAC
CCAGATATTTTGGAGTTGAGTCCCTATGCACAGGGCACACAGTCGGCATT
AGGTGGTGACACATGTTTTTAGGTTCCTGATACTGGTACATTTCAACAAT
CGGCATCCCTAGAGTGTTGTCGTGGCACTGCCAGGGACCTTACCTATCAT
CATTAATCCAATGATATCTGTGCCTTAGCTCCGTTTTGCCTCCTTCTTAA
TTGCCCCGCGTGAATTTGCAAATACGCGTAGTTTTTCTTACCTTTGTCAT
CTAGTTTATTTAATTCGACCCCTGCTTTCCCTTTATCTTACCTTCCTATT
TCCCCATATTTCTCTTTCAACGCACGTCTTTA

CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGTTTGTTACTCCCAAAAGAAA
AAAGTTCAGATAGATGTAGGCAGGGTATAGGGTGGTCCCAGATAGAAAGA
ATCACACCGTGCATTTGTTCAGTGGCCCAGGGCATGATGCTGAGAGGAAA
CAGATGAACAGGACTCTTGTCAACAAGCTCACAGATACTCTTGTTTATTC
GCTCTACAAATGTATATCCCCATGACTGACATAGGGATAGACTGTGGAGT
GTCAGTCATGAGCCATGGTACTTGCAGGAAGAAACAAAAGATTCGCTGAG
GTGAGGGAGTTGTAGCTGGGTGAGGCAAGGTTTCCCAAACTGTGTAGGTC
TGAGCTGAGCTTTGGAGGAAACGGTGTTAGCAGATGGATAAGGGAGGGAT
GTACCATCTTTCTCCTTTCTACCTCTTATCTTTTCCTTTTTTTCCTTTTT
TTCTCTCTTTTTTCTCTCCCTTTCTACTTCTTTTTTTTCTCTCTACTCTT
CTCTTTTTCCCATTCTTCTTTTTTTTCCCTCTCCTTTTTTTACTTCTTTC
TCCTCCCCTCCTTCTCTTATCCTTATTTTCCTATATTTCCCTCCTTCTCT
TTTTCCCCCTCTTTCTCTCCCCCCACCTTCTTTCTTTTTTCTACATACTT
TTCTTTTACTTCTTATCCTTCTACCATTTCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_d04.b1 MSMg01no467_d04.b1 CHROMAT_FILE:
MSMg01no467_d04.b1 PHD_FILE: MSMg01no467_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:59 2005
         (370 letters)



>mm_chr8_92092515_92093284
          Length = 770

 Score =  708 bits (366), Expect = 0.0
 Identities = 369/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggacgctgggatggtttgttttaacactgatgcatggaaaatgaagccccgcccccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tggggacgctgggatggtttgttttaacactgatgcatggaaaatgaagccccgcccccc 511

                                                                       
Query: 61  acaccctcttaatgttagaaaaactcctatgtaaatgatggactgccttatcttgatacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 acaccctcttaatgttagaaaaactcctatgtaaatgatggactgccttatcttgatacc 451

                                                                       
Query: 121 atttgtcttaacttcgcttcctctcacttcagtcatttaatttgtacggcttccaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atttgtcttaacttcgcttcctctcacttcagtcatttaatttgtacggcttccaaatca 391

                                                                       
Query: 181 gagtgactgtcatctattagtctccttggtgacagagggcagggggctgttgtattggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gagtgactgtcatctattagtctccttggtgacagagggcagggggctgttgtattggag 331

                                                                       
Query: 241 ttaataaagcataaacacaagcctaattattgggaagataaaccacgctggcagggtttt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttaataaagcagaaacacaagcctaattattgggaagataaaccacgctggcagggtttt 271

                                                                       
Query: 301 gtcctctagggttggaagtcttggtacccagatattttggagttgagtccctatgcacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtcctctagggttggaagtcttggtacccagatattttggagttgagtccctatgcacag 211

                     
Query: 361 ggcacacagt 370
           ||||||||||
Sbjct: 210 ggcacacagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no467_d04.g1 MSMg01no467_d04.g1 CHROMAT_FILE:
MSMg01no467_d04.g1 PHD_FILE: MSMg01no467_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:59 2005
         (243 letters)



>mm_chr8_91914791_91915433
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtttgttactcccaaaagaaaaaagttcagatagatgtaggcagggtatagggtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtttgttactcccaaaagaaaaaagttcagatagatgtaggcagggtatagggtggt 260

                                                                       
Query: 61  cccagatagaaagaatcacaccgtgcatttgttcagtggcccagggcatgatgctgagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagatagaaagaatcacaccgtgcatttgttcagtggcccagggcatgatgctgagag 320

                                                                       
Query: 121 gaaacagatgaacaggactcttgtcaacaagctcacagatactcttgtttattcgctcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaacagatgaacaggactcttgtcaacaagctcacagatactcttgtttattcgctcta 380

                                                                       
Query: 181 caaatgtatatccccatgactgacatagggatagactgtggagtgtcagtcatgagccat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 caaatgtatatccccatgactgacatagggatagactgtggagtgtcagtcaggagccat 440

              
Query: 241 ggt 243
           |||
Sbjct: 441 ggt 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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