BAC Information

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BAC

Clone NameMSMg01-467M01
Chromosome8 (Build37)
Map Location 101,010,019 - 101,010,543
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467M01.T7 (MSMg01no467_m01.b1)MSMg01-467M01.TJ (MSMg01no467_m01.g1)
ACCAG551386AG551387
length7291,322
length of high quality
(start - end)
528 (46 - 573)---
definitionCHROMAT_FILE: MSMg01no467_m01.b1 PHD_FILE: MSMg01no467_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:43 2005CHROMAT_FILE: MSMg01no467_m01.g1 PHD_FILE: MSMg01no467_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCCAAAGTACACAGCCTTGAAAGCCCCAGCTGTCTTCCTTGAGC
AGGCATGATACCATGGTTTCTGAACAAAACTATGGGCTTGAGTTTCCCCT
AGCAAAGTGACCTAGGCACCCTTATGAGAGAGCACAGTCTGCTAAACTTA
TCTCAGGGGCCGCTGGAATTTCTGTGTTCTACGACAAGGTCGCTATAATT
CCTCACTAGCTATCAATTGTATGACAATAGGGTGTCATCCATCAGCCTGT
AACTTTCATTGCCAAGTGCATTCTATTTTTATATACCCATGAACTCACAC
ATTTAGCAGAGACAGGAAGACGTCTTTCTCTATAGGATAAGCAATGAATT
GTGTATTTCATCTGAAATACGTTATTTTACAATGTATTATTCAGAAATCA
TCTTTGTCACAGACAAAAAAGACTTTGCAAAAAAATCTGTAATATATTCC
TCCTTAAAAACTATTTTTTTCTATGAAGGTTTGCTCAGAGAGCAGATTGA
AAAAAATGTCTTCTATTCTGCCATTTTATAAAATATGTCTCAGCAAATAG
TCATAAATCTGTCAGATATTGCAACCCAGTTTGTTATTATATACTACGAA
AATGAACTCCCCAGCCATTAAATCCTACTTTCCCCAATAACTGGAATTCT
GGATTATACCTCACACATTATTGCCGTTA
ACCTAACTAATCCTACAGATAGACAAGGGCGGGTGAGAAAGCGTCTTCGT
ACGNCTACATACGCGTCGAGTTCAAAGTAATATTATAATCTATATCAACA
GATGACTAGCGACGGCTATATAAGCCACTGGTGTACCGTAGTTATACAAG
TCATAATATATTCAGTAACTCCTAGCGGTCTCTGTACCCGCGTGCGGATG
CGAGAGGATGAGATGTGCGAGCGCGTGGCTTAAGATGTAGGGAGCACGCG
AGCGGTCATAGTTATGTCCACACGGTTAGCATAAATATGAACAGCATAGT
CCGACTGCTGCATACCTGTAAATAAGCAGATTAACACTACACCCCATCGC
TACCGTTGACTCGTATCGAGCTCGCGGCTCGCGTGATTTATGGAGTCTGT
TCGAGCAGTATATGGGGATGTGCACGGCCATATATGTTACGTTATACGGA
NTCACAGTAGACATGAGCCTCGTATGTCAGCCGGCGGGAGAACGTAGTTA
TCTGTGTGTATCACCCGCTCTATGCAGCCTTCCGTTATATCTCACCCAGA
ACGTAATTTCGCTTGCATCGCTCGTACATAACTCTCTTATCATACCCTGC
CTCACTGACGNCGATAACAGCGTTCATCCCGCACATTGACATTGCCCTTC
TTGCCCACCTATACTCACGACGTCGCCGTTCGACAGATATTGCGGATAAT
CTCATACACGTCGCCTGGATTGCGTCTGAGTCCGACAAGAATCCCGTATA
GATACAGGTCTCGCGTACCGCTTAGAAAGCGACACGGGGTACTACAAGCG
GTTCGCAGTTATCGTTCTGAGGCCTCTAGTGAGCCCGCTGTAATAGATTC
GCAGCCGCTAACACGCGCGCCTGGTGTTTCCTCAAGACGTGACCACACAC
ATCACTAGGATGCCCGTCACTATATGTCACGCTACGCGCGCCTGCTACTG
ACTGTGAGTAAATATCGAGAGCGCAGTGTGATACGTCGACGTATCGATAA
TCGGTATATATTCTCGCGACGAGTCCGCCGCGCTAGCCNANACCGACACA
GATTGTGGCCACATGCGAGTTACACGTCGCGATATAATCTATGCTGTCAC
GGACACACGCCACATTCATCATATATAGTTGTAGTACGCGCCGCAACCCT
GCGAGTCATGACGCATATGTCTNATATGTAGCTCGCTCGGACGGACCGCG
AGCATGATGCAAGTCGCGCGTAGGCAGTACATACACAATCGCGTGATGTG
ACACACGCTGCGCTGATTCTAACTCACTACTTACAGTGTATCCACCGATC
AAGAACGAGTGACACGAGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_m01.b1 MSMg01no467_m01.b1 CHROMAT_FILE:
MSMg01no467_m01.b1 PHD_FILE: MSMg01no467_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:43 2005
         (528 letters)



>mm_chr8_101009815_101010743
          Length = 929

 Score =  969 bits (501), Expect = 0.0
 Identities = 519/525 (98%), Gaps = 1/525 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacccaaagtacacagccttgaaagccccagctgtcttccttgagcaggcatgat 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gaattcacccaaagtaaacagccttgaaagccccagctgtcttccttgagcaggcatgat 670

                                                                       
Query: 65  accatggtttctgaacaaaactatgggcttgagtttcccctagcaaagtgacctaggcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 accatggtttctgaacaaaactatgggcttgagtttcccctagcaaagtgacctaggcac 610

                                                                       
Query: 125 ccttatgagagagcacagtctgctaaacttatctcaggggccgctggaatttctgtgttc 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 609 ccttatgagagagcacagtctgctaaacttatctcaggggcctctggaatttctgtgttc 550

                                                                       
Query: 185 tacgacaaggtcgctataattcctcactagctatcaattgtatgacaatagggtgtcatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tacgacaaggtcgctataattcctcactagctatcaattgtatgacaatagggtgtcatc 490

                                                                       
Query: 245 catcagcctgtaactttcattgccaagtgcattctatttttatatacccatgaactcaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 catcagcctgtaactttcattgccaagtgcattctatttttatatacccatgaactcaca 430

                                                                       
Query: 305 catttagcagagacaggaagacgtctttctctataggataagcaatgaattgtgtatttc 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 429 catttagcagagacaggaagacatctttctctataggataagcaatgaattgtgtatttc 370

                                                                       
Query: 365 atctgaaatacgttattttacaatgtattattcagaaatcatctttgtcacagacaaaaa 424
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 369 atctgaaatatgttattttacaatgtattattcagaaatcgtctttgtcacagacaaaaa 310

                                                                       
Query: 425 agactttgc-aaaaaaatctgtaatatattcctccttaaaaactatttttttctatgaag 483
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agactttgcaaaaaaaatctgtaatatattcctccttaaaaactatttttttctatgaag 250

                                                        
Query: 484 gtttgctcagagagcagattgaaaaaaatgtcttctattctgcca 528
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtttgctcagagagcagattgaaaaaaatgtcttctattctgcca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space:   476042
Effective search space used:   476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)