Query= MSMg01no467_o19.b1 MSMg01no467_o19.b1 CHROMAT_FILE:
MSMg01no467_o19.b1 PHD_FILE: MSMg01no467_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:56 2005
(509 letters)
>mm_chr8_102697111_102698019
Length = 909
Score = 884 bits (457), Expect = 0.0
Identities = 492/505 (97%), Gaps = 3/505 (0%)
Strand = Plus / Minus
Query: 5 gaattcaccaagggttcactgcgcttctccaaatagcctgggagatggacaggggctttt 64
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaattcaccaaggggacattgcgcttctccaaatagcctgggagatggacaggggctttt 546
Query: 65 gggagggatgaagcagtagaggaggagtctgcagaacaatgagtatctctgaaacaatta 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gggagggaagaagcagtagaggaggagtctgcagaacaatgagtatctctgaaacaatta 486
Query: 125 aaaagagcagaatttaggagaagaatctttaaaaaaatgctcttgtggaatcagaaaaaa 184
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 485 aaaagagcagaatttaggagaagaatcttaaaaaaaatgctcttatggaatcagaaaaaa 426
Query: 185 atagcagggaatagcgacactagtgacaaaaacaagcaaaaccagagacacagcatcact 244
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 425 atagcagggaatagcgacgctagtgacaaaaacaagcaaaaccagagacacggcatcact 366
Query: 245 gaaaggtatggaagcatgactgtggcagacaaaatagcatgtccttggtgaatatggttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 365 gaaaggtatggaagcatgactgtggcagacaaaatagcatgtccttggtgagtatggttg 306
Query: 305 gtcctaggcctgctcataggatcagccagtggccctgaatcagcacattaatcacagact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtcctaggcctgctcataggatcagccagtggccctgaatcagcacattaatcacagact 246
Query: 365 ctgggccacaacagaacataagagatatatatcagggatgtttgaaccagacaaataact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctgggccacaacagaacataagagatatatatcagggatgtttgaaccagacaaataact 186
Query: 425 catgtcaaaaagtctttgcatgtataactgtttgggcaaaaagaagaaggagagaaatgg 484
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 185 catgtcaaaaagtctttgcatgtataactgtttgggcaaa---aagaaggagagaaatgg 129
Query: 485 caggtggaggggaggagaaagaagg 509
|||| ||||||||||||||||||||
Sbjct: 128 cagggggaggggaggagaaagaagg 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_o19.g1 MSMg01no467_o19.g1 CHROMAT_FILE:
MSMg01no467_o19.g1 PHD_FILE: MSMg01no467_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:56 2005
(466 letters)
>mm_chr8_102500513_102501378
Length = 866
Score = 851 bits (440), Expect = 0.0
Identities = 458/464 (98%)
Strand = Plus / Plus
Query: 1 aaacttcagttgatcatcataagatactttgcagaagaatattgtaaaatatccaaatat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aaacttcagttgatcatcataagatactttgcagaagaatattataaaatatccaaatat 260
Query: 61 ccatcaagtcctggtgtattcaagacctggactttattcgactagttttcattatcagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatcaagtcctggtgtattcaagacctggactttattcgactagttttcattatcagat 320
Query: 121 ctctgaaataaagtattaatctcttccaactgccatggcttaattgatatgtgaacatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgaaataaagtattaatctcttccaactgccatggcttaattgatatgtgaacatat 380
Query: 181 tgcttcaatcttacatgaagaggtgtgtgatttaatttaaataagcttagaaaggggaga 240
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttcaatcttacacgaagaggtgggtgatttaatttaaataagcttagaaaggggaga 440
Query: 241 tttaattattcaaggagaaggtgaagcctggccctcattaccattcttcctctttatttt 300
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaattagtcaaggagaaggtgaagcctggccctcattaccattcttcctctttatttg 500
Query: 301 gagatgaatagtttccaaagtgtgagatatagttaagttagctttctactactataacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagatgaatagtttccaaagtgtgagatatagttaagttagctttctactactataacaa 560
Query: 361 gtaagagagaaaatcaatttataaggtagaattggctcaacgtttttgaagttccaatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaagagagaaaatcaatttataaggtagaattggctcaacgtttttgaagttccaatcc 620
Query: 421 gtgattaattgatctcattgttagagtcatggaatggaacaaga 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgattaattgatctcattgttagagtcatggaatggaacaaga 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
