BAC Information

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BAC

Clone NameMSMg01-468A13
Chromosome8 (Build37)
Map Location 50,006,730 - 50,007,186
singlet/doubletsinglet
Overlap genenone
Upstream geneWwc2, LOC100040113, Dctd, Odz3, 2900073C17Rik
Downstream geneLOC100039866, 4930555F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468A13.T7 (MSMg01no468_a13.b1)MSMg01-468A13.TJ (MSMg01no468_a13.g1)
ACCAG551600AG551601
length1,695760
length of high quality
(start - end)
---457 (74 - 530)
definitionCHROMAT_FILE: MSMg01no468_a13.b1 PHD_FILE: MSMg01no468_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:05 2005CHROMAT_FILE: MSMg01no468_a13.g1 PHD_FILE: MSMg01no468_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCTTAGCTCATGCACAGCATACTACTNGCAGTCCGCTTGTTACTCATA
GGATCTCTNAGCNATATACACTTGCTCTACTACAAATCANTGNGCACGCC
GCAGCCTCGAAACACAGTCTAGCATCACAGTACATGACGCTCCCTCGCTA
GCACCTCGCCGATAGCGTAGACGTACNCTATAGCATACATGCTCGATTCG
ACTAGACGGACAGCCAGCNGTTGACATGCTCACGCGAGCGTCGCGCTGTA
CTTTCNTNGCAGTCGTCAAGTGTATNAGTGTTGCGTTNTCGCTGCTGTCC
TCGTGTCGTGCTATGTGTGATGACAGCGCGTATTGACCGCACTAGGCGCT
GTTGACACCCGAGATGAGAGCGACACTGCAGATTATCTACATTATGCTGC
GTCAGCACATCAGATCCGTCTCTAGCGAGCGCGTCAGACGCGCACGCGCG
TGTCGCGGTGACGTGACTGCGAGGAGCGAGGTAATGAGTCGCGTGTCACA
GCGAGTCCGCGCTATGGCTCTATCAGCACGCGTATACACATCGACCACTA
NTGNTGCGCGTTAGTNATAGACGTACATGAGACGACGAGATGACAATAAC
GTAGTGAGCAGCAATAATTCAGGCAGTGAACAGTGTAGATGGTCGATATC
TCTGNTGTNTATACGTGCGCGACTAANATATCAACGATACACTGTATGTA
TATCTGGATGCAAGAGTAGTGTGTCATGCATGTATTGAGGACTGCGTGAG
TACCAGCTCATCACTCTGATGTTACGTATCTGATCTGTTATATGAGAGTG
AGTAGTCGTACGCTGCAACATCGCACCGCACTATATGACCTGCGCGTCCG
TTCGCTCACGCGCTTGTGTGTCTACCCCATCTGATCGATGCTAGAGCCAC
ATANATGAATGCACTACGATCAGCTGCGACATTAATATATATCTCTATCA
ACTGTGACACATGTCGTACAACATGTAGTGCGCGATCGNATGCCAACATG
AGAGCACGATAGCTACTCCTACNACGCGTATANCAATATATGTCGATGAT
CTATAGCGCACGTGTAGTCTAACTCGCATGACACNCAGTGGATTATATAG
ATACAGTAGTAGTCGCTATCACNAACAGCATAGAGTTCGATGACGCTTAT
CTCAGTGCATGGTACGTTTTCTATCACGCTACTCAGTTACTGTGCGAAAT
AGTTATGTATACGAGTACGCACACGCATATAGTACACCCCATGAGTCCGA
CCGAGTCTAACGCGACGCGCACACGCTCGCTATCACTCGCACTACGCACA
CTCGTGATATGAACTACNCTGTGNCTGGTCGAACGACCCTCACTGAGATG
CTGCGTATTATCCCCTGTAGCTANAGTAATAAGTCATAACACTGCAGCGC
ACCAGCTAACAATAATCACACCATATAAGACACGTCAGATCGCGATCGAG
ACACGATGCAGTACATATGACCGCGTCNACCGCATAGTCAGGACAGCTCT
CAGGGATGTTGACATAGTACGTAGATTATCCTTGCTCCACATCGACGCAT
CGATCAGCTGTCTCTATGCCNTTACNTAATTCGCTGCTNTCTCATCGATT
ACGATTAGCTACGACTGGTATCTATGTGCACCGCCCGCACAGAGTGCTCA
TTGCTNTCACTTATCATGCGCACNAGTCCCGCACTACGCCACATN
NCGATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGTTCTCCCCCCACCTCCAGCTCTTC
CCCCGCGGCCAACCTCACACATTCAGCCACCCTCAGGTCTGCCGTAGTTA
TGAACGTTTGTCTGCCCCTCTAAGGGTTGTTCGGTGAAACTAAGCAATGC
CTGTGGATTACAGCAAGCAGTCTAAAGATAATGCAAAGATATTTGCTGAG
TTCCAAGAGTGTATGATGCACGTATCCCTATTTACTTCCTAATAGGCTCA
TTTCTCTCTTCTTCCCTCCCGTTTCTCTGCTCCTCGTTTTCTGGGCCTGG
AACAAAGGGTTTTGACTCCTTGCAGTTCATGGGCTTTTAGTGAGATCCTT
AGCACTTCATTCTTCTTAAAACATAAAAGAGAGTTTTTGCAAAATTTTCC
ACTGTTACTCATGGAACCTCTGCTGTGGGGAGACTTTTAAACAATGACTT
ATTCCGTGTAAAATGAAAGATATTTCGCTTTGCTCTTGGACAGCTAAGAA
CATCATTTAAGTTAGACTCGCCACCCTTCACCCCCCTCCCTTCGGAACCC
TTTTCCCTTAATAGAATTGAATCTTTTTTTTCTCTTTGAATCTTGTTATT
TATAGAATTTTTATTTTTTTCTTTTGATTACTCACTGTATATTTTTTCAC
TTCACTTTTCCCTTTAATTTTCTTCATTATCCCATCCACTCAACTGTCTC
TATTCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_a13.g1 MSMg01no468_a13.g1 CHROMAT_FILE:
MSMg01no468_a13.g1 PHD_FILE: MSMg01no468_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:05 2005
         (457 letters)



>mm_chr8_50006530_50007386
          Length = 857

 Score =  803 bits (415), Expect = 0.0
 Identities = 447/459 (97%), Gaps = 4/459 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttctccccccacctccagctcttcccccgcggccaacctcacacattcagccaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ctgttctccccccacctccagctcttcccccgcggccaacctcacacattcagccactct 260

                                                                       
Query: 61  caggtctgccgtagttatgaacgtttgtctgcccctctaagggttgttcggtgaaactaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 caggtctgccgtagttatgaacgtttgtctgcccctctaagggttgttcggtgaaactga 320

                                                                       
Query: 121 gcaatgcctgtggattacagcaagcagtctaaagataatgca--aagatatttgctgagt 178
           ||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||
Sbjct: 321 gcaatgcctgtggattacagcaagcagtctaaagataa--cataaagatatttgctgagt 378

                                                                       
Query: 179 tccaagagtgtatgatgcacgtatccctatttacttcctaataggctcatttctctcttc 238
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tccaagagtgtatgatgcacatatccctatttacttcctaataggctcatttctctcttc 438

                                                                       
Query: 239 ttccctcccgtttctctgctcctcgttttctgggcctggaacaaagggttttgactcctt 298
           |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct: 439 ttccctcccgtttctctgctcctcattttctggggctggaacaaagggtttttactcctt 498

                                                                       
Query: 299 gcagttcatgggcttttagtgagatccttagcacttcattcttcttaaaacataaaagag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcagttcatgggcttttagtgagatccttagcacttcattcttcttaaaacataaaagag 558

                                                                       
Query: 359 agtttttgcaaaattttccactgttactcatggaacctctgctgtggggagacttttaaa 418
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 559 agtttttgcaaaaatttccactgttactcatggaacctctgctgtggggagactttttaa 618

                                                  
Query: 419 caatgacttattccgtgtaaaatgaaagatatttcgctt 457
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caatgacttattccgtgtaaaatgaaagatatttcgctt 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)