BAC Information

Click to search

BAC

Clone NameMSMg01-468G22
Chromosome8 (Build37)
Map Location 82,725,951 - 82,726,268
singlet/doubletsinglet
Overlap genenone
Upstream gene1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075
Downstream geneGypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468G22.T7 (MSMg01no468_g22.b1)MSMg01-468G22.TJ (MSMg01no468_g22.g1)
ACCAG551905AG551906
length778809
length of high quality
(start - end)
244 (74 - 317)320 (82 - 401)
definitionCHROMAT_FILE: MSMg01no468_g22.b1 PHD_FILE: MSMg01no468_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:39 2005CHROMAT_FILE: MSMg01no468_g22.g1 PHD_FILE: MSMg01no468_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
GCGGAATTCTGCACTAATGCATCTGGCTCTGAGGTGTTTTGTCTGTCTAG
TTGGTTGGTTTTGCCTTTATATTTTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTATCTACCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC
TATCTATCTATCTATCGATTGGGTGTTTGTGTTTGAATGACTGATTTCTT
TAGGGGCTATAGCACTGTTTAAATAGATTACGTGATCTTGATTTCATTTT
GCTAAGGGGTGGCTGGCTAGAAAATCATCCATTCATTAATATTTTCCAGC
TTTATAGAGTACAGGCTTTTGAAGTAAGACCTAATGATTTTTTGAATTTC
TACAGGGTCTGGTGTTCCTTTGCATTACTGGGTTTGGTTATTTGGGAACT
GTTCCCTCTGCTTCTGGGTAGTTGGCTAACATTTTTGTCTTCTTGTTGTG
TTGTCCGGGTATAATCGTTCTTGGGTTCTCCTGTTCTCTTCCATGCTCTC
CTTTCGCTTTTTTGTTCTTTTTTTATTCCTCTGAAATTTTTCTTCTTCTA
TATTGTTTATTTGCCTTGTTTCTTTTCCCCTCTTTTTTTCTCCTCCTCCA
TCCATTTTCTCTACTGTCTTTCTTTATN
NTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTCTGTGATTATGGTA
GAGAGAGTCACTAAATGACTTGTTCAAGGATGCCCAACAAGTAGATGGAA
ATAAGCTTTAATTCTTGGCAATACCTTCCCCAGGTCACATATGAGAGGAG
TATGTGATATTTATGGTCAGCAATGATGGAAACCTCAAGAAGACCAGAGG
ATTACTCAAAAGACTGAAGATTGCTATGTTTCAGGATTTTCCTTGTCCAA
TCATATTAGGGCAGTGGGAAGCTTGTGATTGGACTGGAGAAGGGAGGTGG
CGCGAAGATTAAGTAGACAGAGAGAGGGGTCTGAGGATGAGAGGAGAACT
AGAACGGCGGTCAACATGTTGTTATCCAAAGGTTACAATAATTGTGTCAA
AGCTTTCCCATTATCATTTGTGCCTTGAAATTAATATATTGCGCTCCTGG
ATATTATAATAATTATTGGTAATTTTTTCTGATTGCGTATCTTTTTCTTA
TTATGTCTCCTTCTTTCCATTTACCAATTGACTTCTCACCCTTCTCTCTA
TATCTTCTGGTCAACCCATTTACATTCCTTTCGCTTTCCCTTCTCTCACT
TCTCACCATTCTTTTCTATTTCTTTCATCTTCCTTTTCTTTTCTATCTTT
CCCTCTTGTTCCTTTTTCTCTTATTCTCTTTCTCTTCTCTTTTCTTTTCC
TTCTTCTCTATTATTCCTTCTTTTTTTCTTTCACCTCTCTTCTTTTTCTA
ATTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_g22.g1 MSMg01no468_g22.g1 CHROMAT_FILE:
MSMg01no468_g22.g1 PHD_FILE: MSMg01no468_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:39 2005
         (320 letters)



>mm_chr8_82725751_82726470
          Length = 720

 Score =  569 bits (294), Expect = e-166
 Identities = 313/320 (97%), Gaps = 2/320 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattctgtgattatggtagagagagtcactaaatgacttgttcaaggatgcccaacaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 201 ttattctgtgattatggtagagagagtcactaaatgacttgttcaaggatgcacaacgag 260

                                                                       
Query: 61  tagatggaaataagctttaattcttggcaataccttccccaggtcacatatgagaggagt 120
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tagatggaaataacctttaattcttggcaataccttccccaggtcacatatgaggggagt 320

                                                                       
Query: 121 atgtgatatttatggtcagcaatgatggaaacctcaagaagaccagaggattactcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtgatatttatggtcagcaatgatggaaacctcaagaagaccagaggattactcaaaa 380

                                                                       
Query: 181 gactgaagattgctatgtttcaggattttccttgtccaatcatattagggcagtgggaag 240
           ||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gactgaagattgct--gtttcaggattttccttgtccaatcacattagggcagtgggaag 438

                                                                       
Query: 241 cttgtgattggactggagaagggaggtggcgcgaagattaagtagacagagagaggggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cttgtgattggactggagaagggaggtggcgcgaagattaagtagacagagagaggggtc 498

                               
Query: 301 tgaggatgagaggagaacta 320
           ||||||||||||||||||||
Sbjct: 499 tgaggatgagaggagaacta 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)