BAC Information

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BAC

Clone NameMSMg01-469B09
Chromosome8 (Build37)
Map Location 73,666,019 - 73,666,570
singlet/doubletsinglet
Overlap geneLOC665858
Upstream gene2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057
Downstream geneLOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469B09.T7 (MSMg01no469_b09.b1)MSMg01-469B09.TJ (MSMg01no469_b09.g1)
ACCAG552404AG552405
length748995
length of high quality
(start - end)		548 (72 - 619)---
definitionCHROMAT_FILE: MSMg01no469_b09.b1 PHD_FILE: MSMg01no469_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:32 2005CHROMAT_FILE: MSMg01no469_b09.g1 PHD_FILE: MSMg01no469_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:32 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGTGATTCCCACACTCTGAAAGAGTTTGCTCTTACAATGCCAC
ATGCTTTTTCCATATGGAATACATCTGTTTATGCTGAAATTTTCTGTTTA
GTAGACATGTATATCTGTTGTTTATGTTGAGCCATTATTTCCAAATAACA
GTTCTTTCTGTGATTGAAGATACATTTCAAAACTTTAATGATTTCTGTAA
AAATTTAATTTAATTTTTTTCTTATGTTTACATCTAGCTCAGTGACCCCC
TCCTGGTCACCCAGTCCCACTTTCTCTCCCTGCCCCTCCTCCACTTCACC
TCTGAGCAGTTTGGGACTCCCTGTATGTCCAAACCCTGGCACTTCGTCTC
TCTCTGAGGACAGAAAAAGTAGCTCAGCTAGAAGAATAAAACTGAGGTAG
GATGAACAGCTTTTTTTGATACCCCCATTCCAGTTGATTGGGACCCATGT
GAAGACCTAGCTGCCCCTCTGCTACATAGGTGCTCGGAGATATCCGTCCA
ACCCATGTTTGTTCTTTGTTTCATTGTTCCATCTCTGAGTGCCCTGAGGG
TTCATGTTATTTGATTCTGGCGGTTGGTCATTCTCTGGAGTTCCTATCTC
CTTCAGGCCCGGAATCCTTCCTTTTAGACTTCCATAAGTGTCTACAGCCA
AACCACCCTGAGCATGCCCGATCTTGTCTTTAATTCTTTTTAGCGTGG

CTTCATATCTACTTGCGACTTACAGGAGGGGAAGGTTGTTTCTAAAAAAG
GGTAGGGGGANGCCAAAGAATTTTCCTCCAAGGAAAGCTAGGATACATAG
CCGCAACACTGTCCTGATAACCCTCTTCTACGATTTACTATATCATACCC
TAACCACCGATTGGAACAAGTGTAAATACTGCCTGCCATAACAATCATGC
CCATATCTACCTGTTAGAGCTTCACCTCTTGTCCGTACCACCCCACATTA
CTTGTTTTCGGCAACTGTAACCCTTTGTTTTCACTCTCCTCGCCGCGATA
CTTGTACTCTTCTCTCACTCGTTTCGTGCTCCCCTATTTTTACCGCCTTT
TCCTTTGCCGCAACCTATCGCCTTTATACCCCTTTCTTTTTTTTCTCTCC
GCCGCATGCCACTTTTCTTACTCATTCACCGCATTTACGTTCCACGTGTC
ATCACTCTGCACCATCCGCTTTACTCTTAACCACACCCAGATACACTCCA
ATTGGCAAGATTACTAATTCGCCTAAACCTCCCTTTCTGTGTTAATACAC
CTTATTTTCGACCCCCCTCTATAACTATCTGACCCCGCCACAAACATAAT
ATATGCCACCCTCCCCATTCTATATTATATATCTAAAATTTTCCGCCCAA
AACATATTGCCATACTTCTGATAAATCCATGAATAAACCCTCTATTACCC
CTCGCCCAACACTATTTCTCCCTTCTCTACTCCTTAATTTCTCGCCAGCT
CCTCTTGATCCATAAGCCTCCCTTCCCCCGCCCCAATCCGTCCGTTTATA
CCGTTTATTATCCCCGCACTCTAGTATTTTTCCGCTATTTCCCACACTTT
CCCTCTTTACCCCCCGATTCTCTATATCTTATTCCCCCATTCCATACCCC
TCTTTTATTTTTATTTTTCCCCTCTTTCCTACAATATATTTTATCATTTG
CGCATAATACCTCTCTCCCGCCACTTTTTTTCTTCCTTAATTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_b09.b1 MSMg01no469_b09.b1 CHROMAT_FILE:
MSMg01no469_b09.b1 PHD_FILE: MSMg01no469_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:32 2005
         (548 letters)



>mm_chr8_73665819_73666765
          Length = 947

 Score =  514 bits (266), Expect = e-150
 Identities = 482/566 (85%), Gaps = 32/566 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaaagagtttgctcttacaatgccacatgctt----tttccatatggaatacatctg 56
           |||||||||| |||||||||||||||||||||| |    |||||||||||||||||||||
Sbjct: 201 tctgaaagaggttgctcttacaatgccacatgcatgccctttccatatggaatacatctg 260

                                                                       
Query: 57  tttatgctgaaattttctgtttagtagacatgtatatctgttgtttatgttgagccatta 116
           |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 261 tttatgctgaaattttctttttagtagacatgtatacctgttgtttatgtttagccataa 320

                                                                       
Query: 117 tttccaaataacagttctttctgtgattgaagatacatttcaaaactttaatgatttctg 176
           || |||| ||||||||||    ||| || |||| |||||||||| |||||||||||| ||
Sbjct: 321 ttcccaa-taacagttct----gtgttttaagacacatttcaaacctttaatgatttatg 375

                                                                       
Query: 177 taaaaatttaatttaatttttttcttat----gtttacatctagctcagtgaccccc-tc 231
           ||||| ||| |||| |||||||||||||    ||| |||||||| ||| || ||||| ||
Sbjct: 376 taaaatttttattttatttttttcttattcatgtt-acatctagttcactgccccccctc 434

                                                                       
Query: 232 ctggtcacccagtcccac--tttctctccctgcccctcctccacttcacctctgagcagt 289
           ||||||||||| ||||||  ||| | ||||||  |||||| |||||||||||||||||||
Sbjct: 435 ctggtcacccaatcccacacttt-t-tccctgttcctcctacacttcacctctgagcagt 492

                                                                       
Query: 290 ttgggactccctgtatgtccaaaccctggcacttcgtctctctctgaggacagaaaaagt 349
           |||||||||| |||||||||| | ||||||||||| ||||||||||||||||||||| | 
Sbjct: 493 ttgggactccgtgtatgtccacagcctggcacttcctctctctctgaggacagaaaa-gc 551

                                                                       
Query: 350 agctcagctagaagaataaaactgaggtaggatgaacagctttttttgataccccc-att 408
           |||||||||||||| ||| | |  |||||| ||||| ||||||||||||||||||| || 
Sbjct: 552 agctcagctagaaggatatatcccaggtagaatgaaaagctttttttgataccccccatc 611

                                                                       
Query: 409 ccagttgattgggacccatgtgaagacctagctgcccctctgctacataggtgctcggag 468
           |||||||||||| ||||||  ||||||||||||||||||||||||||||||||| | |||
Sbjct: 612 ccagttgattggaacccatacgaagacctagctgcccctctgctacataggtgcacagag 671

                                                                       
Query: 469 atatccgtc-----caacccatgttt-gttctttgtttcattgttccatctctgagtgcc 522
           || || |||     ||     ||||| |||||||| ||| |||||||||| || |  |||
Sbjct: 672 atgtctgtctgggtca-----tgttttgttctttggttctttgttccatccctaaaagcc 726

                                     
Query: 523 ctgagggttcatgttatttgattctg 548
           |  |||||||| ||||||||| ||||
Sbjct: 727 ccaagggttcaggttatttgagtctg 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 947
Length adjustment: 10
Effective length of query: 538
Effective length of database: 937
Effective search space:   504106
Effective search space used:   504106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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