BAC Information

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BAC

Clone NameMSMg01-469C06
Chromosome8 (Build37)
Map Location 104,854,998 - 104,855,435
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469C06.T7 (MSMg01no469_c06.b1)MSMg01-469C06.TJ (MSMg01no469_c06.g1)
ACCAG552446AG552447
length1,743764
length of high quality
(start - end)
---438 (78 - 515)
definitionCHROMAT_FILE: MSMg01no469_c06.b1 PHD_FILE: MSMg01no469_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:37 2005CHROMAT_FILE: MSMg01no469_c06.g1 PHD_FILE: MSMg01no469_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCCACGGGAGCGAGGAGTGCGTCNGTGTAGATNGTGGTAACCAGTATAG
ATGTAGTAGCATACTATTTTACTATAAACAATCATATCACTTATAGCGAG
ACCAATACAATACTCCCCGTATATACACATACCATCTATAGATATAATCA
TCGCNACGATTAAGCGTGTAGCACTCGATATACGACGCTATGATGTGTAG
TAGGTGTGAGAGACCAGTCTATTAACACAAGCAAGATAAGTACCGTANTA
GTCAGAGCAACGTCCCACAGTATAATCGCGCCTCCGTCTNCAGACCTGCG
CGACGCTATTGAGCGTCGCGACTATATGCTGTTAGTGTGATCTGTCTGCG
CGTCAGTAGTGCTATATATCGTATAATGGAGCGGCGTAGTCGGAGTGAGC
TGCGCTCGTCGNATGACGATAACACGGTTATTCGCNACCGTGTCGTATTA
GTCGTGACGTGAGTACGACGCGANGTCGCTGTTATTGGTGCGCGCTCCGT
GCGATGTGTGTAGTATGTATATTTTGCGAGGGGAGAGNCAGCAGTCGCGG
ACGCGTCGTCGCGCGTGACTATATCTACACTTACTCCGCGCGCTCTCGNC
CGCGCGNCGACGTCATCAGCTATTACATCTGTACCGCGCGCGTCGCGCTG
CTTGACGCACGAGTTCGCGCACACGTATTCACAGCGTCATATATATATTT
CGAGCGGGCGAGACGTCGAGAGTAGTATTATAGAAGTGCGCGCAGCGCGC
TCAGGCGCGTATTGTGCGGGTGATATGTCGGCGACGGACGTCACTGAACG
TATGAGAGNCGATTGACGTAAGAGAGGACAACGCAGCGTCGTATTGTGTA
GATGATAGTTATATAANATATAATATAGCGCCGCGGTCATATGTATGCTG
CGTCGANCNAGCGGTGNCGTACATCTATGATAANCGTTAACGCAGAGAAG
TACACGCGAAANGATCNGCGAGTAGACGGAGCCCGCGCTGGGTACGCGAA
ACATATACATGTCTGCTGCGCGCCGGCCCGANTATGCATATATCTGTCGC
ATNCATGGCGCGTACAGATCGTTGCATAACAGCGGCGCGACCGCTGTCAG
ATTATACGCACCCGATCGAGCATTATGTAGGTCGGTTCGCTAGTCGATAA
TANACCGTCGTACGATGCGTGATCGTAGTCGGGACGCAGGTGCAGGAGAA
CAGTGTAGTATAATGTAGGTACTACACGATATGTACAGGACGCTGTGTCT
AGACTGTCTATCTGAGTTCNATGCAGATTTGTACGCGCCTAATATGCATG
TAGCATNTCTGGGCGCGAGTAGTGTGCAGGCGGCGTATGTAGCTTATATA
TCGTGAGCGCGGCGTAGTGTAATNTGCANGCACGGGATGACTAGATATCA
GGACAATACGCTANCGGCGTCGCGCGCGCTCATACATATATACTCGCGTG
CTGACACGGACCGTAGCGCGCGNCGACGACTATAGTACTGAGCGAGGATG
TATGATGTCGACTGNCGNCGNCTGCNATTNTACGTNGATGCACGGANTAG
CACGCGCGGCGATGATAGCATATATGAGTGACGTAGTGGCGAGAGTACGA
GTGAGTGNAGGTGTGCTGACGTACGATGAGAATACATCGTAATGATAAGC
TAGNGCGACGCTGTGTGATATCGCATNCGNTCNATTGTTACTANTATATT
TAGANANTGACGCGCGATNCGCAGTCGATGTGACCCGAGATAG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTTATTAGACATGAATGTAC
ACAGGCATTAAACTTTGACCTTTAAGCTTCCACTTTTGAGGAAAAAGGAA
GACATTGATTTTGTGGTTCCCTAAGGTCTTGCAAGTTTGTCAGCAAACCA
TGCATACTTAATCACATTCTCTTAATGAACTGCTGCTGTCAATTTAGATT
TTCATAAACACACCAGTAAGGAGGCATGGAGAGCAGAGATTCCTGAAATC
GGTCTGTGATACCCCAGGGTGTCGCCTATTATTTTCAGGTGGGGGTTGAG
GATGTCGCAAAAGTCTCTGACAAAACTAATTTTAATCCACTTCAGTTTGC
AAAATTGCAGCCCATGAAGCACTTTGATTAAGAAGGACATTTTAGAAAAT
CAAGTGAGTCACAGTAGGGTGTTGCAAATGGAAAAACAAACAAACAAAGA
TCTTTGGTATAGAAATTCATAGGCAATTACATTTTCCCTGCTTTGTCCTC
ATCGCATCTGGCAGCTCTTATTGGGATCTCAGTCCATGAGCCCACTTTAC
TATGAAGCTTACACATCACCCTGCGTTCCCACCCTTTCGTTTGTTTCCAC
TCATCTTCCCCTCTCCTTCTGCCCACTACACATTATTACTCTCTACAAAA
TTGTTTCAAAGACCAACTCTTTCACCAACTTTTTTCCACCCTATTGCTAT
TTTCCCCTACCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_c06.g1 MSMg01no469_c06.g1 CHROMAT_FILE:
MSMg01no469_c06.g1 PHD_FILE: MSMg01no469_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:37 2005
         (438 letters)



>mm_chr8_104854798_104855635
          Length = 838

 Score =  808 bits (418), Expect = 0.0
 Identities = 433/438 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttattagacatgaatgtacacaggcattaaactttgacctttaagcttccactttt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agttttattaaacatgaatgtacacaggcattaaactttgacctttaaggttccactttt 260

                                                                       
Query: 61  gaggaaaaaggaagacattgattttgtggttccctaaggtcttgcaagtttgtcagcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggaaaaaggaagacattgattttgtggttccctaaggtcttgcaagtttgtcagcaaa 320

                                                                       
Query: 121 ccatgcatacttaatcacattctcttaatgaactgctgctgtcaatttagattttcataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatgcatacttaatcacattctcttaatgaactgctgctgtcaatttagattttcataa 380

                                                                       
Query: 181 acacaccagtaaggaggcatggagagcagagattcctgaaatcggtctgtgataccccag 240
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacaccagcgaggaggcatggagagcagagattcctgaaatcggtctgtgataccccag 440

                                                                       
Query: 241 ggtgtcgcctattattttcaggtgggggttgaggatgtcgcaaaagtctctgacaaaact 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgtcgccaattattttcaggtgggggttgaggatgtcgcaaaagtctctgacaaaact 500

                                                                       
Query: 301 aattttaatccacttcagtttgcaaaattgcagcccatgaagcactttgattaagaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattttaatccacttcagtttgcaaaattgcagcccatgaagcactttgattaagaagga 560

                                                                       
Query: 361 cattttagaaaatcaagtgagtcacagtagggtgttgcaaatggaaaaacaaacaaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattttagaaaatcaagtgagtcacagtagggtgttgcaaatggaaaaacaaacaaacaa 620

                             
Query: 421 agatctttggtatagaaa 438
           ||||||||||||||||||
Sbjct: 621 agatctttggtatagaaa 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)