Query= MSMg01no469_k12.b1 MSMg01no469_k12.b1 CHROMAT_FILE:
MSMg01no469_k12.b1 PHD_FILE: MSMg01no469_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:18 2005
(456 letters)
>mm_chr8_3442349_3443204
Length = 856
Score = 799 bits (413), Expect = 0.0
Identities = 445/461 (96%), Gaps = 10/461 (2%)
Strand = Plus / Minus
Query: 1 caacataccaaccctggcagtgcttacactctgagcctgaggggacagatcagcagatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 caacataccaaccctggcagtgcttacactctgagcctgaggggacagatcagcagatgg 597
Query: 61 ggtcttctgctgcaagggatcccttttctgccctataaaacactaagtcccccgtcttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 596 ggtcttctgctgcaagggatcccttttctgccctataaaacactaagtcccccatcttgg 537
Query: 121 cacaacctccactcctgcagagactgcgatccttcactttgattaaagggtaacctgctt 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 536 cacaacctccactcctgcagagactgctatccttcactttgattaaagggtaacctgctt 477
Query: 181 tggtagaggattgtctttatttatatatcacctctttctatcgcttctgctgacaaccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tggtagaggattgtctttatttatatatcacctctttctatcgcttctgctgacaaccta 417
Query: 241 ata-----ttttttggggcacccacccagctctttcctttggcccacctttcctcactct 295
| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agaggggc-----tggggcacccacccagctctttcctttggcccacctttcctcactcc 362
Query: 296 cttcacccatctccctcctttctctgacacacattcatggagggcatgaccactgaccag 355
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 361 cttcacccatctccctcctttctctgacacacatccatggagggcatgaccactgaccag 302
Query: 356 gcttactcagggactaaacagttgcctgctcagacacagaacctctaggtcttggtgtct 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcttactcagggactaaacagttgcctgctcagacacagaacctctaggtcttggtgtct 242
Query: 416 ttacttctttgtcaatgcaaatggtgcaaatcccaaatggt 456
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 ttacttctttgtcaatgtaaatggtgcaaatcccaaatggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_k12.g1 MSMg01no469_k12.g1 CHROMAT_FILE:
MSMg01no469_k12.g1 PHD_FILE: MSMg01no469_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:18 2005
(132 letters)
>mm_chr8_3223705_3224236
Length = 532
Score = 203 bits (105), Expect = 3e-57
Identities = 125/137 (91%), Gaps = 10/137 (7%)
Strand = Plus / Plus
Query: 1 agatacaaagacactttcctagctgctaaacagtgtcctgaactgccactaacaaagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatacaaagacactttcctagctgctaaacagtgtcctgaactgccactaacaaagtga 260
Query: 61 aattggtctttttacc-----tcatagcgacaaagatggcataagtttcagtttatttcc 115
|||||| | ||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aattggcc-----accagacctcatagtgacaaagatggcataagtttcagtttatttcc 315
Query: 116 tgattggttcattccca 132
|||||||||||||||||
Sbjct: 316 tgattggttcattccca 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space: 64976
Effective search space used: 64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
