Query= MSMg01no469_m04.b1 MSMg01no469_m04.b1 CHROMAT_FILE:
MSMg01no469_m04.b1 PHD_FILE: MSMg01no469_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:27 2005
(544 letters)
>mm_chr8_42567646_42568589
Length = 944
Score = 1027 bits (531), Expect = 0.0
Identities = 537/539 (99%), Gaps = 1/539 (0%)
Strand = Plus / Plus
Query: 7 gaattcactacatt-tcaaagataatcttgaatttctgatcttctggcctttgtctcctg 65
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcactacataatcaaagataatcttgaatttctgatcttctggcctttgtctcctg 265
Query: 66 agtgctgtgattatgggcatgtaccaggcacttaggaagttcttggggtcacacaagggc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agtgctgtgattatgggcatgtaccaggcacttaggaagttcttggggtcacacaagggc 325
Query: 126 tttttacatgctaggctagtactctcccaactacatcctcaacctcaaatactctatttg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttttacatgctaggctagtactctcccaactacatcctcaacctcaaatactctatttg 385
Query: 186 aagtgtttagatgggagtttaagtatttctcacacatgtacaaccaggagttgagtaaat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aagtgtttagatgggagtttaagtatttctcacacatgtacaaccaggagttgagtaaat 445
Query: 246 tggatgtttagaataaggaactaagaatatggaacttgtatccctagttattttaagaaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggatgtttagaataaggaactaagaatatggaacttgtatccctagttattttaagaaa 505
Query: 306 aaggaagcattcatattcttacttgtaattacttttctcttgaatttcagtataagattt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaggaagcattcatattcttacttgtaattacttttctcttgaatttcagtataagattt 565
Query: 366 tagagttatctctgatgtccaaatataaataaaggcaccataaaatttccccacatcatc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tagagttatctctgatgtccaaatataaataaaggcaccataaaatttccccacatcatc 625
Query: 426 tcctttttttatctggtgtatgtgtgcgtatgggcgtgtgtgtttagtactgcccatctg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tcctttttttatctggtgtatgtgtgcgtatgggcgtgtgtgtttagtactgcccatctg 685
Query: 486 taaatatattcagctggttgatctcttcaaagtgattatataggcaaaccatacaggtc 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 taaatatattcagctggttgatctcttcaaagtgattatataggcaaaccatacaggtc 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_m04.g1 MSMg01no469_m04.g1 CHROMAT_FILE:
MSMg01no469_m04.g1 PHD_FILE: MSMg01no469_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:27 2005
(481 letters)
>mm_chr8_42716413_42717293
Length = 881
Score = 922 bits (477), Expect = 0.0
Identities = 480/481 (99%)
Strand = Plus / Minus
Query: 1 aaagtgttggcaaagagcaaaactatgtggctatgtggccccttggctctgtgtgcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aaagtgttggcaaagagcaaaactatgtggctatgtggccccttggctctgtgtgcttcc 723
Query: 61 aaggagacagacatgcagacacaaatacacacacacacacacacacacacacacacacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aaggagacagacatgcagacacaaatacacacacacacacacacacacacacacacacac 663
Query: 121 acacacaaggaaatgctacagttcctgccacaagactctcaaaaatctgtctgcaatcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 acacacaaggaaatgctacagttcctgccacaagactctcaaaaatctgtctgcaatcat 603
Query: 181 gtacccacttctgtgttcaccaggctccaaagcattggccagatattttagggccctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtacccacttctgtgttcaccaggctccaaagcattggccagatattttagggccctgtg 543
Query: 241 aggtgccatgatgaagttggcatataattagagtgtgttctaaaacaacatttgagacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aggtgccatgatgaagttggcatataattagagtgtgttctaaaacaacatttgagacat 483
Query: 301 ggggcgtggtatttgggacccttcacatcaccttctagaatggggcaagtgactcagagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggggcgtggtatttgggacccttcacatcaccttctagaatggggcaagtgactcagagt 423
Query: 361 gggtcctgaggtaaacaagaacataaatgagcacatgttacaaaaggttctgatttatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gggtcctgaggtaaacaagaacataaatgagcacatgttacaaaaggttctgatttatac 363
Query: 421 taaggtaaacctaccgcaaatcattctcaagtatgattataaaatttaaataattactaa 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 362 taaggtaaacctaccgcaaaccattctcaagtatgattataaaatttaaataattactaa 303
Query: 481 g 481
|
Sbjct: 302 g 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
