BAC Information

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BAC

Clone NameMSMg01-470J14
Chromosome8 (Build37)
Map Location 85,219,249 - 85,219,494
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp4b, LOC671182, Il15, EG666564
Downstream geneLOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470J14.T7 (MSMg01no470_j14.b1)MSMg01-470J14.TJ (MSMg01no470_j14.g1)
ACCAG553564AG553565
length764797
length of high quality
(start - end)
174 (325 - 498)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no470_j14.b1 PHD_FILE: MSMg01no470_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:34 2005CHROMAT_FILE: MSMg01no470_j14.g1 PHD_FILE: MSMg01no470_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAACAGCATCCGCGGAAT
TCCACACATATCTCATCACTGGGTAGTTACCAAGAATGCCAAGAATATCA
CGAAGAAATATTTCTTCATCAGAAATACTGAGAAAACTGATATTGTACAA
AGAACCTAATTAGACCCCTTTCTGTTTCATCACAAAAAATTAATTCAGAT
GGATCAAAATTTTAACCTGAAAGCAGGAACCTACTGGAGGACATGTCCCT
GTGGTATAGCAGATCATCTTTTGGGCATGTGCCCAGGAGCAGTATAGATG
GGTCTTCAAGTAGAACTATTTTCTATTTTCTGAGGAACTGCCAGATTGGT
TTGTAGAGTGGTTGTATCATTTTACACTCCCTCCTGCAAGAGAGGAGTGC
TTTCTACATCTTTGCTAACATCTGCTATCACTTGAATTTTTTATCTTAGA
CACAAGGACACTTGTTCTACTATGTTCATAGCAGCCTTGTTCATAATACC
AGAAGCTGGAAACAATACAGATGTCCTCACACAGAAAAATGGATATAGAA
AATCATGTTAATTTACACAATGGAATACTATTCAGCTATTTAAAATGACA
ACATTATGAATTTTGCACCCAACTGGAATGAACTATCAAACTCCCCTCAG
ATCCATGTATCCCTTAATCAACTGCATGGCATGTACCCCCCTGATTTACC
GCTTTTTACCCCCCACTTTTTTTATCACCCATGACCAACTTGTCCACTGC
CATTATTTCCATTA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTAGGAGAGATGTGAGCTTGTTTGTG
GCATTTGCTGCTGTTTACAGAGCCTTTGTTCTTGTGGGCAGTACACTTGG
GGTCTAGCTTATGTGAACTCTGAACTAACCCTTACTTACTAATGCTCTAC
AGAGACTTCATCTTGGTAGTATAGATTGGACTTACCATGAAAGATCAGAG
ATGGGGATGTTGAGATTGTTTCATTAATAAAATGCAGATATGAGGATCTA
AGCTTGATTCCCAGGACCCTTTTTATAGCCAGGTGCAGTGGCATGTCACT
CTGGTCCTGTCACTGGCTAGCCAGTCTGGCCAAATAAATCTGTGAGCTTC
TAGTTTAGTGAGGGATCCTCTCTCAAAAACAAAGCAGGAAGCGAGACAGG
AAGATGCTTAATGTTGACCTCTGACCTCTACTTGTACATATACACATGCT
CAAATATATGTATGGATGCTCTCACACACATACACACACCCATACACATA
TTCTCACTCTCTCACACTTACTTACACGTAATCTTTCGTAGGCTATAGCA
ATCCTTTATTCTCTTCCCCACTTTGCTTGCCTTCTCCCCCGTTCTCTCTT
TCCCATCTGCCTTCCTTTCTTTCTTTCGCCACATATTTTCCCTTTCCCCG
TTTTTTCCTGCCTCCCCTCCCCCTATTCTCCTTCTTCTTCTGTCTCTCCT
GCTTCTTCTCCTTTGCTCTCTTTCCCCCTTGCCTCTTCCCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_j14.g1 MSMg01no470_j14.g1 CHROMAT_FILE:
MSMg01no470_j14.g1 PHD_FILE: MSMg01no470_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:34 2005
         (246 letters)



>mm_chr8_85219049_85219694
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaggagagatgtgagcttgtttgtggcatttgctgctgtttacagagcctttgttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agtaggagagatgtgagcttgtttgtggcatttgctgctgtttacagagcctttgttctt 387

                                                                       
Query: 61  gtgggcagtacacttggggtctagcttatgtgaactctgaactaacccttacttactaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtgggcagtacacttggggtctagcttatgtgaactctgaactaacccttacttactaat 327

                                                                       
Query: 121 gctctacagagacttcatcttggtagtatagattggacttaccatgaaagatcagagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gctctacagagacttcatcttggtagtatagattggacttaccatgaaagatcagagatg 267

                                                                       
Query: 181 gggatgttgagattgtttcattaataaaatgcagatatgaggatctaagcttgattccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gggatgttgagattgtttcattaataaaatgcagatatgaggatctaagcttgattccca 207

                 
Query: 241 ggaccc 246
           ||||||
Sbjct: 206 ggaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)