BAC Information

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BAC

Clone NameMSMg01-470M16
Chromosome8 (Build37)
Map Location 13,785,362 - 13,785,603
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16
Downstream geneUpf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470M16.T7 (MSMg01no470_m16.b1)MSMg01-470M16.TJ (MSMg01no470_m16.g1)
ACCAG553711AG553712
length781771
length of high quality
(start - end)
89 (74 - 162)242 (73 - 314)
definitionCHROMAT_FILE: MSMg01no470_m16.b1 PHD_FILE: MSMg01no470_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:49 2005CHROMAT_FILE: MSMg01no470_m16.g1 PHD_FILE: MSMg01no470_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXCATTGCCACAACGAGCCGCGGAA
NNCNTTGGTTCGCCCAGAGACCCATTTTTTAACGGGGCTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
TTTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGCTCTG
TTCAGGAACTTTTTTTCTTCGTTTCATACCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGCTCCCTGATC
CACTTATATTTGACCCTTACACAAGGAGATAAGCATGGATCGATTCGCAT
TCTTCTACACGATAACTCTCTGCTGTGCCAGCACCCACTGTTGAAAATGC
TGCCTTTCTTCCCTTGTATGGTCTTACCTCCCCTTGTCCACAGACCAAGT
GACTATAGCCGTGTGTCTTCATCTTCTGCCTTCCCCTTTCTCACTTCCCT
GCTCTCCTTTGCCTCTCTCTCTCCCCTCTCCCCGCCTATTTGTTCTTCCC
CTCCTGCTTTTTCTTCTTTCTTCTCTACTCCCGCCTTCCTTTTCCCCCCT
CTCTTTACCTCCCCTTTTCCCCCTCACCTTCTACTTTTCTCCTCTATCCT
CCCTTCTTCCCCTTCTTTCCTCCTCTCCCCC
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGTGTTCAGTGTCCCCTCCCCGGCCCTGA
CAGGGAAGGGGCGGTGCCAGTGCTGGGCCGCGCCTGTAGGGGGCAGCGCG
GCAGTTTTTAAAAGACCGCGAACGTCCTAGAACGGCGACGACGGTGAAGG
AGATCGGTGCTGCCAGCCACGCGGAGAGCAGATGCTCACTCCGGACGTCC
CGTGCGCTGCTGACCTGCGGTGGGGACTGGGAGCCCCCGGTCCACCCGGA
GTCACTGGGACAGTTTTTTTGTAAACCCGTCGCTCTCCTCGTCCCACTCT
GCCCTCCGCCTCCCTCCTACACGTTTTCTCTGCTGAGACAGGGCTTTGTG
TAGCCTTGATTGTCCTGGAACTCACTCTGCAGATCTGGTCCTCCTGGAGC
TCATAGATCCTCTGCCTCCTGGGATTAAAGGCGTCTGGTTTCTTATTCCC
ATTTTACCTGTATCAGATATACGAACCATATTGCCTTTCCTTGTGCTCCA
TGCCGTTTATCCCCATTCTCCCTCTTTTCTTGTTTTCCCCCACCGCCCAT
TTCCCCGAATTCGTCGCGTGTCTCTTCCTGATACGTGTCTGTTCCTCTTT
TTTTTTTCTTTCTTCTTTACCGCTTTCCGTCTTCCTTTTTTTTTGTCTTC
TCCTTTTTTCCCTTTCTCCCTTCTACATTCCGTCCGTCGGCGTCGTCCTT
TTCTCGTTTTCCTTTCGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_m16.g1 MSMg01no470_m16.g1 CHROMAT_FILE:
MSMg01no470_m16.g1 PHD_FILE: MSMg01no470_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:49 2005
         (242 letters)



>mm_chr8_13785162_13785803
          Length = 642

 Score =  429 bits (222), Expect = e-125
 Identities = 237/242 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgttcagtgtcccctccccggccctgacagggaaggggcggtgccagtgctgggccgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 442 gtgttcagtgtcccctccccggccctgacagggaaggggcggtgccaatgctggcccgcg 383

                                                                       
Query: 61  cctgtagggggcagcgcggcagtttttaaaagaccgcgaacgtcctagaacggcgacgac 120
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct: 382 cctgtagggggcagcgcggcagtttttaaaagacagcggacgtcctagaacggcggcgac 323

                                                                       
Query: 121 ggtgaaggagatcggtgctgccagccacgcggagagcagatgctcactccggacgtcccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggtgaaggagatcggtgctgccagccacgcggagagcagatgctcactccggacgtcccg 263

                                                                       
Query: 181 tgcgctgctgacctgcggtggggactgggagcccccggtccacccggagtcactgggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgcgctgctgacctgcggtggggactgggagcccccggtccacccggagtcactgggaca 203

             
Query: 241 gt 242
           ||
Sbjct: 202 gt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)