BAC Information

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BAC

Clone NameMSMg01-471A18
Chromosome8 (Build37)
Map Location 107,859,241 - 107,859,797
singlet/doubletsinglet
Overlap geneFhod1
Upstream geneCmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171
Downstream geneSlc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471A18.T7 (MSMg01no471_a18.b1)MSMg01-471A18.TJ (MSMg01no471_a18.g1)
ACCAG553906AG553907
length7651,027
length of high quality
(start - end)
564 (46 - 609)---
definitionCHROMAT_FILE: MSMg01no471_a18.b1 PHD_FILE: MSMg01no471_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:09 2005CHROMAT_FILE: MSMg01no471_a18.g1 PHD_FILE: MSMg01no471_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTCTGTTTTCCCTGGCTGTCCTGGAGCTCACTCTGTAGACCAGG
CTGGCCTCGAACTCAGAAATCCGCCTGCCTCTTGATGCTCTGCCTCCACC
CCCAAGTGTTAGAATTACAAGGTGTGTGCTGCCACCGTACCTGTTACTTC
CTGACTTTCCTTTGGCTTGAAGTCCCTGTACCCCCTCCTCCCTCCGCGCA
CACACACCTCACTGTAAATACGTCTCCAAATTCATCCACAAGCTCTCTGT
CCACATCCACATCTCTGGTCTAAGCTACTCAGCTATCACTGTTGAAGCTT
AGGGACCACGATGATCCCAGGAAACTGTGCCCAGTGGTTAAGCCTTTGGG
TTACTAAGGAAGCGTTAAGTCTAGAAGAATGAGTTCCCGAGAATCCTCCT
CGGGTGGCTACATCAGCTGCTGCTGGGCAAGCAAGGCTGAAGCCCTGAGC
ACATGGCAGGCCTGGCAGACTGGCCTCTATACTTACTCTAGCCTGGCCTG
CCCAGGAAGGGACTGGGGGACAGGTGGACTCTCAGGGGAGCTGGGTAGGG
GGATGAGAGGAAGACGTGGTAACTATGGTGCCAGCTCGATTCAAGGCCCG
CTTGTTGTACCCGTACAGAGCTGGACAGGAGTGTCACAGTGCCTTGTCAT
CCACAGTGGTAAGGAGAGAAGACTATGGGTGGTGGGACATGGGGGAAACA
GAACGGAAGCTGGAC
GCGTGAGGTGGCGCCCAGAGCAGGCTGGGGACGACACGAGGGTCTCTGCG
CCCGTGGGCTGGGCCGCCCACCCCCGCCGTCTTTTCCCTCTCCGCCGGAC
GAGGCGGTATCCGAGGGGAGTATGTGTGGCGCGGAGGCGGCGCGGCGCGG
GGCGTTGGCGCAGGCGCGGCACCGGAGGCAATAACACCCCGGAGGACTGA
GCGCGGTGGAGCACCAACGGACGCATCTCCTCGCCTTTTAGCTTGGTTAA
ATGTAGGACGCTACTCTACACACACACCTACCTCCTGCTGCGCTCGTGCC
CGCGGTGGGCGTGCGCGTGCGAGCACGTAAGGTAAGACGGACGACGATAA
TTATTAGATAAAGTACGCTGCAGACCGCGTGCGCCCATTAGCTTCCCGCT
GTAATTCCGGGAGTCGGCCCCGCGTGTCGGCCGGGCGGCGGTCGGTCTAG
TGCTGCTTTAGTTTGTTCCCCGCCGTGCGACGCGATCTGGTGCGTGCGCG
GCGTTATCTACGTGCGGGGCGCCCCGATCTGGACTTATGTGCAGCAATGC
TATGGGTTGTTAGTACTGGTTGCGGTCTGTGGCGTCGCGCACGTAACGGT
TCTTTGTAACGCTAGCGCGCGAAAAGCTCCGCAAGACTTGTTGGAGGAGA
TGATGTGTCGTGGGCAGGTCGGTTAGTTTATAGCAGGCCGAAGTGACGGC
TATAATCGCCGCGGTATATGAAATAATAATCACAGCATGCTTTTCGCACG
AACAGAAGAAGATAGTAGCGACTTTTCTCATCACGTGTTAAAAGAGATCG
GCCGCCGACTATCGCTTTGGTCGCGTATTTCAGCCGCGAGGGACGTTCTT
GTGCAGAAGCGACCATCCCGTGACCATCATGGGGCGTGTCGTATTCCCTG
TAGTCAGCGAGCTAGTGATTTAATAATCTCGCGTACAGGTGCGCCGGGCG
CGAGTATTTCGACCAGCGATTATTAGAGAGCACGGATATTATGAGGGTGG
TACAAACGACGCCACGCCCTTACCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_a18.b1 MSMg01no471_a18.b1 CHROMAT_FILE:
MSMg01no471_a18.b1 PHD_FILE: MSMg01no471_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:09 2005
         (564 letters)



>mm_chr8_107859035_107859997
          Length = 963

 Score = 1017 bits (526), Expect = 0.0
 Identities = 550/558 (98%), Gaps = 1/558 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctgttttccctggctgtcctggagctcactctgtagaccaggctggcctcgaa 66
           ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 207 gaattctctgttagccctggctgtcctggaactcactctgtagaccaggctggcctcgaa 266

                                                                       
Query: 67  ctcagaaatccgcctgcctcttgatgctctgcctccacccccaagtgttagaattacaag 126
           |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 267 ctcagaaatctgcctgcctcttgatgctctgtctccacccccaagtgttagaattacaag 326

                                                                       
Query: 127 gtgtgtgctgccaccgtacctgttacttcctgactttcctttggcttgaagtccctgtac 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtgtgtgctgccaccgtacctgttacttcctgactttcctttggcttgaagtccctgtac 386

                                                                       
Query: 187 cccctcctccctccgcgcacacacacctcactgtaaatacgtctccaaattcatccacaa 246
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 387 cccctcctccctcggcgcacacacacctcactgtaaatacgtctccaaatgcatccacaa 446

                                                                       
Query: 247 gctctctgtccacatccacatctctggtctaagctactcagctatcactgttgaagctta 306
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gctctctg-ccacatccacatctctggtctaagctactcagctatcactgttgaagctta 505

                                                                       
Query: 307 gggaccacgatgatcccaggaaactgtgcccagtggttaagcctttgggttactaaggaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gggaccacgatgatcccaggaaactgtgcccagtggttaagcctttgggttactaaggaa 565

                                                                       
Query: 367 gcgttaagtctagaagaatgagttcccgagaatcctcctcgggtggctacatcagctgct 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gcgttaagtctagaagaatgagttcccgagaatcctcctcgggtggctacatcagctgct 625

                                                                       
Query: 427 gctgggcaagcaaggctgaagccctgagcacatggcaggcctggcagactggcctctata 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gctgggcaagcaaggctgaagccctgagcacatggcaggcctggcagactggcctctata 685

                                                                       
Query: 487 cttactctagcctggcctgcccaggaagggactgggggacaggtggactctcaggggagc 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cttactctagcctggcctgcccaggaagggactgggggacaggtggactctcaggggagc 745

                             
Query: 547 tgggtagggggatgagag 564
           ||||||||||||||||||
Sbjct: 746 tgggtagggggatgagag 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space:   527962
Effective search space used:   527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)