BAC Information

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BAC

Clone NameMSMg01-471B14
Chromosome8 (Build37)
Map Location 42,325,709 - 42,482,562
singlet/doubletdoublet
Overlap genePcm1, Asah1
Upstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1
Downstream geneFrg1, LOC100039376, Gm1815, LOC671994, Zfp353, EG620772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471B14.T7 (MSMg01no471_b14.b1)MSMg01-471B14.TJ (MSMg01no471_b14.g1)
ACCAG553946AG553947
length754789
length of high quality
(start - end)		635 (66 - 700)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no471_b14.b1 PHD_FILE: MSMg01no471_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:13 2005CHROMAT_FILE: MSMg01no471_b14.g1 PHD_FILE: MSMg01no471_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,482,016 - 42,482,562)(42,325,709 - 42,325,987)
sequence
ATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTATCTTGTCCTCCAGGACACACATTCCCGGCGCTGTGGACTCTTG
ACTGCTGCTGCACTGCCTGTCTCTTCTCAGTCCATGTTTGATCCGTACAT
TTAGAGGACGTTAGAAACTCTATAAAGCTAAAAGTGAGTAAAGCTTTGAC
ACGCTTCCTTTTTTTTTTTTCTTTTTTTCCGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGGTGGTTAGTACCATAACAAGGAATGTCATGTTGTATA
GAAGGATATTTCAAGGCTAGCCTGGGGTGCATAAGACCCTGTTCCCCCAA
AAAGTGTTTTAGGCAGGGTCTCTAGAGGAGGAACACCAAGGAGAGGGTGG
GAAAAAAGAAAGGGGAGCTAAAAACAGTGTATTAAATGAACTTCATAATA
ATGATGGCCATTTCACTCCTGACTGGGTGCCTCAATTGGATTAAGTCCCA
AAGTAGCTGTCTCTCACTGTGAGGTGATGACTCACAGTTACTCATGTCAC
AGGTTGGGTTGCCCCAGTAGTCCCAGTCTGGCACTGGAAGCCCAGGAAAC
TCCCATAGAGCCTGTGTTCCTTTTTCAGCGATGGAAGCTTGGGAATGCTG
ATTCTGCTGCTAGTGAAGGAGGCAGTGGTATGAATCAGCGCAGTTCAAGA
GGGAGAGCCAGGTGTCGAGAGAATAACCTCTCTGAAATAGACTTTCAACT
GGGN

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCCTGGGAGGGGTCCCGGGCGGCC
CGGATCCTCCTGGGTGCAGAGAGTCTGTGGCCCGGGAGTTTTCTGCGGTC
CCTTTTATTCTTGGAGCAGGAAGGCCCCTGGAGGCGTTCCTGACTCCTGC
TAGTAGGTTCTTTTCGCTAAGAAAATGTTAATTTAATAATCCTTCTCCGC
GCTCCTCCCACTGCCCCTTCTTCACCCCTTCGGGAAGATCCAGTTTCTTT
ACATCTAGAATGGGTGGTGGGGGGGCGAGGGGGAGACTGGGGATGGGTGG
GTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTNNNNTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTNNNNNNNNNNNNNNNNNNNTNNNTTNTNNNTTTTTTTTTTTTT
TTTTTTTTTTTTTNNTTNNTTNTTTTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_b14.b1 MSMg01no471_b14.b1 CHROMAT_FILE:
MSMg01no471_b14.b1 PHD_FILE: MSMg01no471_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:13 2005
         (635 letters)



>mm_chr8_42481528_42482562
          Length = 1035

 Score = 1050 bits (543), Expect = 0.0
 Identities = 546/547 (99%)
 Strand = Plus / Minus

                                                                        
Query: 89   gaggacgttagaaactctataaagctaaaagtgagtaaagctttgacacgcttccttttt 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 gaggacgttagaaactctataaagctaaaagtgagtaaagctttgacacgcttccttttt 976

                                                                        
Query: 149  tttttttctttttttccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtggttagta 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  tttttttctttttttccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtggttagta 916

                                                                        
Query: 209  ccataacaaggaatgtcatgttgtatagaaggatatttcaaggctagcctggggtgcata 268
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 915  ccataacaaggaatgtcatgttgtatagaaggatatttcaaggccagcctggggtgcata 856

                                                                        
Query: 269  agaccctgttcccccaaaaagtgttttaggcagggtctctagaggaggaacaccaaggag 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  agaccctgttcccccaaaaagtgttttaggcagggtctctagaggaggaacaccaaggag 796

                                                                        
Query: 329  agggtgggaaaaaagaaaggggagctaaaaacagtgtattaaatgaacttcataataatg 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  agggtgggaaaaaagaaaggggagctaaaaacagtgtattaaatgaacttcataataatg 736

                                                                        
Query: 389  atggccatttcactcctgactgggtgcctcaattggattaagtcccaaagtagctgtctc 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  atggccatttcactcctgactgggtgcctcaattggattaagtcccaaagtagctgtctc 676

                                                                        
Query: 449  tcactgtgaggtgatgactcacagttactcatgtcacaggttgggttgccccagtagtcc 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675  tcactgtgaggtgatgactcacagttactcatgtcacaggttgggttgccccagtagtcc 616

                                                                        
Query: 509  cagtctggcactggaagcccaggaaactcccatagagcctgtgttcctttttcagcgatg 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  cagtctggcactggaagcccaggaaactcccatagagcctgtgttcctttttcagcgatg 556

                                                                        
Query: 569  gaagcttgggaatgctgattctgctgctagtgaaggaggcagtggtatgaatcagcgcag 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555  gaagcttgggaatgctgattctgctgctagtgaaggaggcagtggtatgaatcagcgcag 496

                   
Query: 629  ttcaaga 635
            |||||||
Sbjct: 495  ttcaaga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no471_b14.g1 MSMg01no471_b14.g1 CHROMAT_FILE:
MSMg01no471_b14.g1 PHD_FILE: MSMg01no471_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:13 2005
         (281 letters)



>mm_chr8_42325509_42326189
          Length = 681

 Score =  540 bits (279), Expect = e-158
 Identities = 279/279 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcctgggaggggtcccgggcggcccggatcctcctgggtgcagagagtctgtggcccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcctgggaggggtcccgggcggcccggatcctcctgggtgcagagagtctgtggcccg 260

                                                                       
Query: 61  ggagttttctgcggtcccttttattcttggagcaggaaggcccctggaggcgttcctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagttttctgcggtcccttttattcttggagcaggaaggcccctggaggcgttcctgac 320

                                                                       
Query: 121 tcctgctagtaggttcttttcgctaagaaaatgttaatttaataatccttctccgcgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgctagtaggttcttttcgctaagaaaatgttaatttaataatccttctccgcgctc 380

                                                                       
Query: 181 ctcccactgccccttcttcaccccttcgggaagatccagtttctttacatctagaatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcccactgccccttcttcaccccttcgggaagatccagtttctttacatctagaatggg 440

                                                  
Query: 241 tggtgggggggcgagggggagactggggatgggtgggtg 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtgggggggcgagggggagactggggatgggtgggtg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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