BAC Information

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BAC

Clone NameMSMg01-471E19
Chromosome8 (Build37)
Map Location 23,886,124 - 23,886,765
singlet/doubletsinglet
Overlap genePlat
Upstream geneDefb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb
Downstream geneAp3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931, Zmat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471E19.T7 (MSMg01no471_e19.b1)MSMg01-471E19.TJ (MSMg01no471_e19.g1)
ACCAG554099AG554100
length767796
length of high quality
(start - end)		649 (44 - 692)553 (72 - 624)
definitionCHROMAT_FILE: MSMg01no471_e19.b1 PHD_FILE: MSMg01no471_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:30 2005CHROMAT_FILE: MSMg01no471_e19.g1 PHD_FILE: MSMg01no471_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATAGTTTTCCTGGGCAAGAGTTACACAGCGTGGAGGACCAACTCCC
AGGCACTCGGCCTAGGCAGACACAATTATTGTCGGTATGTAGCTCAGCAT
CTAAGGGAGTCAGATCCCAGCAAAGAGGCCTGGGATACTGGGCAGGAAAA
AGATTCAGTGTAAAGCATTGTATGAAAGATGATGGATGTTATTTAGAGAA
ACCTATTAGTTTTCTAAGACACATGGGTTTTGCTATTATTTTTCGGTTTG
AATGGAATGGGGTATGTGTGTATTTGATAGTGTGTGTATGTATGCTCATG
CTTAGAGGTACATGTATATATACATAGGTGTATGTGTGTGTGTGTAGGCC
TGGGGTTAATATCAGGTGTCTTTTTTCTTATCCATCTCTACCTTTATTTT
TTGAGACAGAGTCTCTTTCTGAACCTGGAGCTAATTTATAAGACCAGGCT
GGTCCGTGAACTTCAGAGGCCTGCTCTCCACTCCAGAGACCTTGGCCCCT
CTCCCCACTGGGCTTACAGGAGCAGGTTGCTATGCCTGAAAAAAAATTTT
TTTTAAACAGACAAGGCCTCACTACATAGCTCTGGCTTGTCTGGAACTCT
CTATGTAGACAAAGCTTGCCTGGAACTTACTAGGTAGGCAGAGACCCTCC
AGCCTTTTTCTCTTGAGTGCTGGAATTAACAGTGTGCTCCGCCATCCCCT
GTTCTCCTGTTTTCTCT

ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACAAAGAGATAGAAACGTTGAAGAGTAC
TGAAGCTGAAATGAAGATGGTGCTGAGAAACCCAATAGCCCATCTAGGAA
CTCAAAGGAAAGCTTTTTGAGCAGAGTGTATCTACAGAAGCCAGAACATC
AGGGCTTGAACATACAGTAGGAGCTAGACCAAATAAGCAAGGAACAAGAC
ATTCAACCAGGAAAGGAACACACAGGACATGTGGAACACCACGATAAAAA
ACAAACCTTCAAATTATAGCATAGATAAGGGAGAAGAATCCCAAGTTAAT
GGTGTAGGTCAGATCTTCAACAAGATCATAGGAGAAAACTTTCCCAAACT
AAGGAAGAACACACCCATACAGATACAAGAAGCACTCAGAACAGCAAACA
GTCAAGATCAGGAAAGACAATTCCCATATCATATTATACTTAAAACATGA
AGTATATATAACAACAACAACAAAAGTATTGAAAGCAGCAAGAGGAAAAA
ATGTGCAAGTCACATACACAGGAAAAGCCATCAGAATAACAGCTGACTTC
TCAATGGAAACTTTGAAAGCCAGAAGAGCCTAGAGAAAAGCATTCCAAGT
CCTCAAAGACTATGACAGTCAACTTAATATATTCCGCAAAACCATCTGCC
ATGATTGAAAGGAAAAGAAAAATGTATAATGANCATAACAGCCTAAAATA
TTATACCCAGTTAACAAACCCCACCTAAGAAAAATACNGGAAGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_e19.b1 MSMg01no471_e19.b1 CHROMAT_FILE:
MSMg01no471_e19.b1 PHD_FILE: MSMg01no471_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:30 2005
         (649 letters)



>mm_chr8_23885921_23886969
          Length = 1049

 Score = 1114 bits (576), Expect = 0.0
 Identities = 624/642 (97%), Gaps = 5/642 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatagttttcctgggcaagagttacacagcgtggaggaccaactcccaggcac 63
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatagtcctcatgggcaagagttacacagcgtggaggaccaactcccaggcac 263

                                                                       
Query: 64  tcggcctaggcagacacaattattgtcggtatgtagctcagcatctaagggagtcagatc 123
           ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 tcggcctgggcagacacaattattgtcggtatgtagctccgcatctaagggagtcagatc 323

                                                                       
Query: 124 ccagcaaagaggcctgggatactgggcaggaaaaagattcagtgtaaagcattgtatgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagcaaagaggcctgggatactgggcaggaaaaagattcagtgtaaagcattgtatgaa 383

                                                                       
Query: 184 agatgatggatgttatttagagaaacctattagttttctaagacacatgggttttgctat 243
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agatgatggacgttatttagagaaacctattagttttctaagacacatgggttttgctat 443

                                                                       
Query: 244 tatttttcggtttgaatggaatggggtatgtgtgtatttgatagtgtgtgtatgtatgct 303
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatttttcggttgggatggaatggggtatgtgtgtatttgatagtgtgtgtatgtatgct 503

                                                                       
Query: 304 catgcttagaggtacatgtatatatacataggtgtatgtgtgtgtgtgt--aggcctggg 361
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 504 catgcttagaggtacatgtatatatacataggtgtatgtgtgtgtgtgtgtaggcctggg 563

                                                                       
Query: 362 gttaatatcaggtgtcttttttcttatccatctctacctttattttttgagacagagtct 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttaatatcaggtgtcttttttcttatccatctctacctttattttttgagacagagtct 623

                                                                       
Query: 422 ctttctgaacctggagctaatttataagaccaggctggtccgtgaacttcagaggcctgc 481
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 624 ctttctgaacctgaagctaatttataagaccaggctggtctgtgaacttcagaggcctgc 683

                                                                       
Query: 482 tctccactccagagaccttggcccctctccccactgggcttacaggagcaggttgctatg 541
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctccaccccagagaccctggcccctctccccactgggcttacaggagcaggttgctatg 743

                                                                       
Query: 542 cctgaaaaaaaa---ttttttttaaacagacaaggcctcactacatagctctggcttgtc 598
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cctgaaaaaaaaaaattttttttaaacagacaaggcctcactacatagctctggcttgtc 803

                                                     
Query: 599 tggaactctctatgtagacaaagcttgcctggaacttactag 640
           ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 804 tggaactctctatgtagacaaggcttgcctggaacttactag 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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