NNNNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTCTGTCTAAAGGAAATGCATGGACAAAGAGTGGAGCA
GAAACTGAAGGAAAGGCTATCCAGAGACTGCCCCACCTAGTGGTCCATCC
CATCTGCAGACACTAAACCCAGACACTACTGATGATGTGTTTCAATTCTT
GCCCTGGCTTGGTATCACCTTCCTGACTTAGGAATTGCTCCAGTCATGGT
TTTACATCGATTCTGGAGGCATAAACCCCGGGGGATCTGTGTCTGTTCCT
ACATCCAGTATTACTCTACCTGCCCTCAATCCTGACCATGCTGGGGGCTA
TAAATTGGCAGCTGCAATGGTCTTTGGGACTGAAAATAAATTTTGACTTT
ACCTTTCTTCAAGCCATCGGCATCTACCTCATCTACAGACAGCCTGTAGG
AAGACTGACCTGGGATGTGGCTGTACAATGGTTGGTACTAGAATAAACCT
CATCTCTGATTGAAGCATGAATTTGCCCCTTCCAAATCTGTGTCATTTTA
ATTGAGGTCAGGACTTTTGATATGAAATGTAATCTCCTATTTTCTGGTTG
TTTTTGTACCAAGATCATGTGGAATTGTTCCTAATTATTCTTTGGCCTTC
TTTCCACAAAACTGTGTTTGTATCATCTCTATACTGGGGATTTTGGGTCA
CACCTTTTCCCGAACTATAAGGAAAGCC

ATAGAGCGGCCGCCATAGACAAGCGATCCTCGCAGTTACAAACGAATCTC
AAGACAAGATGTTAATAATCTTCTCCCTCCTCAAAAAGGAGGGTGGGCAA
AAAGGNNNNAGNNNNNNAAANNNAACCAAAAAANAAANAAAAAAAAAAAA
AAATAAAAAAAAAAAAAAAAAANAAAAAAAAAAACAAAAAAAACAAAAAA
AATAACAAAAAAAAATAAACCCCCCACTCACTACCCCCCCATACTCTTTC
CTACCCCCCCCCCCTCCCCCCCATTCCCCCTTAACTCACAAAACTCCCTT
ATACACCCCCAACTTCTTATTTCAGG

Query= MSMg01no471_f03.b1 MSMg01no471_f03.b1 CHROMAT_FILE:
MSMg01no471_f03.b1 PHD_FILE: MSMg01no471_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:32 2005
         (638 letters)



>mm_chr8_62740504_62741546
          Length = 1043

 Score = 1038 bits (537), Expect = 0.0
 Identities = 574/589 (97%), Gaps = 7/589 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattccttctgtctaaaggaaatgcatggacaaagagtggagcagaaactgaaggaaagg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 aattccttctgtctaaaggaaatgcatggacaaagagtggagcagaaactgaaggaaagg 880

                                                                       
Query: 66  ctatccagagactgccccacctagtggtccatcccatctgcagacactaaacccagacac 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ctatccagagactgccccacctagtggtccatcccatctgcagacactaaacccagacac 820

                                                                       
Query: 126 tactgatgatgtgtttcaattcttgccctggcttggtatcaccttcctgacttaggaatt 185
           ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 819 tactgatgatgtgtttcaattcttgccctggtttggtatcatcttcctgacttaggaatt 760

                                                                       
Query: 186 gctccagtcatggttttacatcgattctggaggcataaaccccgggggatctgtgtctgt 245
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 759 gctccagtcatggttttacatcgattctggaggcataaaccctgggggatctgtgtctgt 700

                                                                       
Query: 246 tcctacatccagtattactctacctgccctcaatcctgaccatgctgggggctataaatt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tcctacatccagtattactctacctgccctcaatcctgaccatgctgggggctataaatt 640

                                                                       
Query: 306 ggcagctgcaatggtctttgggactgaaaataaattttgactttacctttcttcaagcca 365
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ggcagctgcaacggtctttgagactgaaaataaattttgactttacctttcttcaagcca 580

                                                                       
Query: 366 tcggcatctacctca----t--ctacagacagcctgtaggaagactgacctgggatgtgg 419
           |||||||||||||||    |  ||| ||||||||||||||||||||||||||||||||||
Sbjct: 579 tcggcatctacctcaaaagtgacta-agacagcctgtaggaagactgacctgggatgtgg 521

                                                                       
Query: 420 ctgtacaatggttggtactagaataaacctcatctctgattgaagcatgaatttgcccct 479
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 520 ctgtacaatggttggtactggaataaacctcatctctgattgaagcataaatttgcccct 461

                                                                       
Query: 480 tccaaatctgtgtcattttaattgaggtcaggacttttgatatgaaatgtaatctcctat 539
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tcaaaatctgtgtcattttaattgaggtcaggacttttgatatgaaatgtaatctcctat 401

                                                            
Query: 540 tttctggttgtttttgtaccaagatcatgtggaattgttcctaattatt 588
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tttctggttgtttttgtaccaagatcatgtggaattgttcctaattatt 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1043
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1033
Effective search space:   648724
Effective search space used:   648724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)