BAC Information

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BAC

Clone NameMSMg01-471G05
Chromosome8 (Build37)
Map Location 14,332,895 - 14,333,170
singlet/doubletsinglet
Overlap geneDlgap2
Upstream geneTfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, LOC100041140
Downstream geneC030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471G05.T7 (MSMg01no471_g05.b1)MSMg01-471G05.TJ (MSMg01no471_g05.g1)
ACCAG554167AG554168
length7751,259
length of high quality
(start - end)
304 (75 - 378)---
definitionCHROMAT_FILE: MSMg01no471_g05.b1 PHD_FILE: MSMg01no471_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:37 2005CHROMAT_FILE: MSMg01no471_g05.g1 PHD_FILE: MSMg01no471_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGCTATTTCGCCTCCCGTGATCTGCGCGTGGTTCTTCCCC
CACGTGCGCTTGTCTGGCAGCTGTCAGTCTGAAGCCCCCTCCGCTACCCT
GGTGGTGTCCTGACTCTCAGCTTCCTCAGAAGCTCCATCTCCAACTGTAT
TGTCACCTTATCTGTGCTTCTCAAGGCTCTGCTCTGAAGAAGGACAGGGT
GGTGGCTGCTGGTGTCCTACTCCGGCATCCAGATGGACTTCTGCATGTGT
GTTTATTTCTTCATTAAAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTATNNNTNTTTTTTTTTTTTTTTTT
TTTTTTTTTCCTTTTTTTNNTTTTTTTTTTCTTCTCTCTTTTCTCTCCCT
TCTTCTCTTCCCCTCCCCCCCTCCTTTCTTCCTCTTTCTCTTTTTTTTCC
CCCCCCTACCCTTTCCCTTTTTCTTTTTTTTTTTTTTCCCTTCTTCTTTT
TCCGTCTTCTTCCCTTTTATTCTTTTTTGTTTTTTTCATTTCCCTCTTTC
CCCCTTATATTCTGCCTTTCCCTTCCTCCTTTTTCTTTTTTTCTTTCCCC
CCCCGCTATCTTTTCGCCTCTTCTTTTCTTTTTTTTCCTCATCCTTTATT
CCCCCTCCCTTTTTCCTTTTCCTTTTCTTATTTATTCTCTAATCGCATAT
TCTTATCTCTTTCTAATTTACCTTG
ATAATATATATATATATTCTCGCGCCGGGTGTTGGGTTTGGGGGTGGGGG
TTTTTATTATGGGGCGTGGGTAGGTAACTGATTTTCCACGATCTACGGGG
GTGAGCTATGGAGGGTGGGGGGCCACGAGGAGGGGTGTGCGTGTGGTGGG
GGCAGTGAGGGTGGAGGAGACGGAAAGAGCGGTTATGTGAGGCCGTGTGG
GTGGCAGAGTGCGGGATTTACGCGGGTCTTGGGGAGTTGAGTTATGATTG
TTTTATCGTATATNAAGAAGAGTGATCCATACATACACGCGAGCGAAATT
ATAAAGCAGGAAATAGTGGAGAATCTCGGTAGTGAGCGAATAGTTAAGTC
AATAAAATGTATACCAAGTAGAGAGAGATATGTGGGAGGGAGTAGAGAGG
TGTGTTGTGTGTGGAGGCGGGATATAACATAGTCGGTGATAATGAGGCGG
GCGGGATCGACGGGGATGGCGTAGTGGAGATAGATATAGTGCGCGAGAGT
GAGGAATACAAAAATGAAACAAATTGGGAGGAGGTGGGATATAGAGGGAG
ATAGACTAAGAGTAGGACGAGAGGAGTGTGCGGCGGTGGGAGTGTAGGCG
TTTGTGTGATTGATTTGACGCGGCGCGAAGCGCACGACGCGACTTGGATC
TCTCGAATTGATGAGTATACGTGGGGGGAGGCGGCGGTGGGCGGGTGTAT
CGGCGCGGTTTTCCTCCATATTCGGCGCGCGTACTGTATACGAGATACAC
AATCATATTATAATGCGAATGCGACGCAGGCATTGCGGACGTTCATTATG
TGTGTTTTATCTAGCGCAGCGAGGCGAGTCGACGTGGGGAGATTGTCGTG
GGAGATCTAAATGCGGCGCCGGGAGCGGCATACTCTATGTATTGATTGGT
CGGTGGTGGTGTGTCGCACCGGGCCAGTATAGCGCGAAGGTTGTTGTCTT
CGATGTCTAGCGCGTGCGAGTGTATTCCGAGACGCCGCCGCATTATCAAT
ATATATNNTTACGTGGCCGAGACGCGCGCGCGAGGATGCGGAGTACGAGT
ACAAACGTATGGCGGATAAGATATACACGTTTGTCGTAGCCATTCATTGT
AATTTATAACTTTATATGTAATCTATATCGGCGCGCGTGTGNAGGANTGC
GATCTTGAGAGGGGAAGTGGTTAGTTATATTGATAGGTGGNGGTGTGGTG
CGCGCATAGGTATGTGTGGATGTATGTCACGCGTATGCGTGTCAGAGATA
TGATAGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_g05.b1 MSMg01no471_g05.b1 CHROMAT_FILE:
MSMg01no471_g05.b1 PHD_FILE: MSMg01no471_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:37 2005
         (304 letters)



>mm_chr8_14332695_14333398
          Length = 704

 Score =  418 bits (216), Expect = e-121
 Identities = 259/276 (93%), Gaps = 6/276 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgtgatctgcgcgtggttcttcccccacgtgcgcttgtctggcagctgtcagtctgaag 60
           |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 201 ccgtgatctgcgcgtggttcttcccccacgtgcgtttgtctggtagctgtcagtctgaag 260

                                                                       
Query: 61  ccccctccgctaccctggtggtgtcctgactctcagcttcctcagaagctccatctccaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ccccctccgctaccctggtggtgtcctgactctcagcttcctcagaagctccgtctccaa 320

                                                                       
Query: 121 ctgtattgtcaccttatctgtgcttctcaaggctctgctctgaagaaggacagggtggtg 180
           ||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ctgcattatcaccttatctgtgcttctcaaggctctgctctgaagaagggcagggtggtg 380

                                                                       
Query: 181 gctgctggtgtcctactccggcatccagatggacttctgcatgtgtgtttat-t-----t 234
           |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |     |
Sbjct: 381 gctgctggtgtcctactccggcatccaggtggacttctgcatgtgtgtgtatgtgtgtgt 440

                                               
Query: 235 cttcattaaaatttgtgtgtgtgtgtgtgtgtgtgt 270
           |||||||||||   ||||||||||||||||||||||
Sbjct: 441 cttcattaaaacacgtgtgtgtgtgtgtgtgtgtgt 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)