Query= MSMg01no471_h20.b1 MSMg01no471_h20.b1 CHROMAT_FILE:
MSMg01no471_h20.b1 PHD_FILE: MSMg01no471_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:45 2005
(651 letters)
>mm_chr8_121001396_121002446
Length = 1051
Score = 882 bits (456), Expect = 0.0
Identities = 504/530 (95%), Gaps = 18/530 (3%)
Strand = Plus / Minus
Query: 5 gaattcctcttatcctccccgccccaaagctcaatatccatattttattaaattagcatg 64
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattcctcttagcctcccccccccaaagctcaatatccatattttattaaattagcatg 467
Query: 65 acataatttttttaaagaaatgagtttcagcacagcgaggctacgtggtactgcctaagt 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 466 acataatttttttaaagaaatgagtttcagcacagcgaggctacgtagtactgcctaagt 407
Query: 125 gagctatgatccaaatgtgttcatggatagaaataacttccacctccccaccgggtagac 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gagctatgatccaaatgtgttcatggatagaaataacttccacctccccaccgggtagat 347
Query: 185 ggtaaataggccgtgctctgggcttggtgagtgctttgaaagccagccatgtggcatttt 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 346 ggtaaataggccgtgctctgggcttggtgagtgctttgaaagctagccatgtggcatttt 287
Query: 245 tctgtaattagctccactgtgcatcctctctccctcgcctaagtctcctgggaaccaacc 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 286 tctgtaattagctccactgtgcatcctctctcccttgcctaagtctcctgggaaccaacc 227
Query: 305 tcctcagcttctttagctgctgacacgcacgcacgcacgcacgcacatgcatgcacacac 364
||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct: 226 tcctcagcttctttagctgctgacacgcacgcatgcacgcacgcaca--ca--cacacac 171
Query: 365 acacacacacacaca--------------tacacacacacagcgccatctctctcttccc 410
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 170 acacacacacacacacacacacacacacatacacacacacagcgccatctctctcttccc 111
Query: 411 acggtcagtgtctgggagtgccacatgttcaaaccctgccgacatcagcaacacctacct 470
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 atggtcagtgtctgggagtgccacatgttcaaaccctgccgacatcagcaacacctacct 51
Query: 471 gtcaaactgtctcaccagcaaatccaccaagccatatagaagccagccaa 520
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 gtcaaactgtctcaccagcaaatccaccaagccatatagaagccagccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_h20.g1 MSMg01no471_h20.g1 CHROMAT_FILE:
MSMg01no471_h20.g1 PHD_FILE: MSMg01no471_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:45 2005
(550 letters)
>mm_chr8_120814485_120815434
Length = 950
Score = 1064 bits (550), Expect = 0.0
Identities = 550/550 (100%)
Strand = Plus / Plus
Query: 1 actttggaccagtaggcctgcagatatctaggatttctgtggcagtcaactgtgtttcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttggaccagtaggcctgcagatatctaggatttctgtggcagtcaactgtgtttcat 260
Query: 61 ataagagtgtggtgtcttagggtcctgctgctaatatggccgattcagtttctgttctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagagtgtggtgtcttagggtcctgctgctaatatggccgattcagtttctgttctct 320
Query: 121 tgggggctctgcttggcaggggggaatcaatatcaattaatgaataatttaaaagcaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggggctctgcttggcaggggggaatcaatatcaattaatgaataatttaaaagcaaga 380
Query: 181 caaccaccgcggaggaaggcaacacagtggtgtgaggttgaaccaccatgcacaccgcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaccaccgcggaggaaggcaacacagtggtgtgaggttgaaccaccatgcacaccgcta 440
Query: 241 actgaaattatccaccccgtgatggcacatattgctgtcatctgattcatccaagtctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgaaattatccaccccgtgatggcacatattgctgtcatctgattcatccaagtctgt 500
Query: 301 attcctgtggatcacaacagtacctggcacagcgtaggcatccagcaaacatgaatggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcctgtggatcacaacagtacctggcacagcgtaggcatccagcaaacatgaatggat 560
Query: 361 gaacagatggataatagaagtcaggaaggcatcagacccagatacaaggtctaggagact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacagatggataatagaagtcaggaaggcatcagacccagatacaaggtctaggagact 620
Query: 421 tctctgacagccttgtgatggagcgcaaagcttcaggaggaagtaggtgtactgaagcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctctgacagccttgtgatggagcgcaaagcttcaggaggaagtaggtgtactgaagcct 680
Query: 481 aggagaaggtgggcatgggagaggcaatccacaaggaaggcacagactgagtaatgcctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggagaaggtgggcatgggagaggcaatccacaaggaaggcacagactgagtaatgcctc 740
Query: 541 tgtgcagaag 550
||||||||||
Sbjct: 741 tgtgcagaag 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
