Query= MSMg01no472_e04.b1 MSMg01no472_e04.b1 CHROMAT_FILE:
MSMg01no472_e04.b1 PHD_FILE: MSMg01no472_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:50 2005
(577 letters)
>mm_chr8_112317479_112318455
Length = 977
Score = 1031 bits (533), Expect = 0.0
Identities = 563/573 (98%), Gaps = 1/573 (0%)
Strand = Plus / Minus
Query: 5 gaattccaggtttactgagagaccatgtcccaaaaggctaaggggaagaacagtaagata 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaattccaggttcagtgagagaccatgtcccaaaaggctaaggggaagaacagtaagata 697
Query: 65 tgcctacacaagtgaagatgctcgctcacacactcgttcgtacacagaagggagggaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tgcctacacaagtgaagatgctcgctcacacactcgttcgtacacagaagggagggaatt 637
Query: 125 gaagccatctagttagtatgctagcaaaaagcattcaatggctttgcttcctaaggtcct 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 636 gaagccatctagttagtatgctagcaaaaagcattcaatggcttggcttcctaaggtcct 577
Query: 185 aagtctttcttcaatttgttcaactcctaactctatgtccaaccccacctggtttgttca 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aagtctttcttcaatttgctcaactcctaactctatgtccaaccccacctggtttgttca 517
Query: 245 gtgttggaaaatcaaacctagggtcccttgcatgctgagcaagcaatacatcttcaacct 304
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 516 gtgttgaaaaatcaaacctagggtcccttgcatgctgagcatgcaatacatcttcaacct 457
Query: 305 gtaaaattcattttagaaaactctgcaacccaaactagaactaaaatttctcctgctcat 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 456 gtaaaattcattttagaaaactctgcaacccaaactagaactaaaattcctcctgctcat 397
Query: 365 gtgctagaattacaggtatacaaagccatgcccagccatttagaaaatgttctgtccaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtgctagaattacaggtatacaaagccatgcccagccatttagaaaatgttctgtccaaa 337
Query: 425 agttaagcgaaactgggtttggggacttaaattaaatgaggttattttagatattcaaag 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agttaagtgaaactgggtttggggacttaaattaaatgaggttattttagatattcaaag 277
Query: 485 tgtaattagaattattaccacagcactgcctgctcttccagagtacccaagctcaattcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgtaattagaattattaccacagcactgcctgctcttccagagtacccaagctcaattcc 217
Query: 545 cagtacccacgcagcagctcacaacctgtaact 577
|||||||||| |||||||||||||| |||||||
Sbjct: 216 cagtacccacacagcagctcacaac-tgtaact 185
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_e04.g1 MSMg01no472_e04.g1 CHROMAT_FILE:
MSMg01no472_e04.g1 PHD_FILE: MSMg01no472_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:50 2005
(476 letters)
>mm_chr8_112117625_112118497
Length = 873
Score = 832 bits (430), Expect = 0.0
Identities = 463/476 (97%), Gaps = 5/476 (1%)
Strand = Plus / Plus
Query: 1 cttcaccggctagtgatgcccacgactggcttgtgcagtccatcgaggccacagttcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcaccggctagtgatgcccacgactggcttgtgcagtccatcgaggccacagttcaag 260
Query: 61 ggacatgctttgagacagctctccctctcaggactcagtcacgcagcttgcttgagttgg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ggacatgctttgagacagctctccctctcaggactcagtcacgcagcttg----agttgg 316
Query: 121 taggcgccttttgggtggggcttcaggctggtacggtcacctgcggtgatctgctccaat 180
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 317 taggcgccttttgggtggggcttcaggctggtaccgtcacctgcggtgatctactccaat 376
Query: 181 ggcatctgtcactgtgttaaagccccgttctctggaaagagaagcagcagcctgttactg 240
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggcgtctgtcactgtgttaaaaccccgttctctggaaagagaagcagcagcctgttactg 436
Query: 241 caaggattccatgctccccatgagcacactgcttactacactgtcccacacccaacgcgc 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caaggagcccatgctccccatgagcacactgcttactacactgtcccacacccaacgcgc 496
Query: 301 cctgggacctctactctcccctcacccaggtagctgcacaaacgtccacacaggccttct 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 497 cctgggacctctactctcccctcacccaggcagctgcacaaacgtccacacaggccttct 556
Query: 361 gtgcaggaagggaggtaactttatatcctgcagctcccagacactgagtcgatgtaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtgcaggaagggaggtaactttatatcctgcagctcccagacactgagtcgatgtaaatt 616
Query: 421 cattacctgctttgttctgctaggactcctccatcccc-ggcacccgagaaagtgg 475
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 617 cattacctgctttgttctgctaggactcctccatcccccgggacccgagaaagtgg 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 873
Length adjustment: 10
Effective length of query: 466
Effective length of database: 863
Effective search space: 402158
Effective search space used: 402158
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
