Query= MSMg01no472_k16.b1 MSMg01no472_k16.b1 CHROMAT_FILE:
MSMg01no472_k16.b1 PHD_FILE: MSMg01no472_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:22 2005
(468 letters)
>mm_chr8_98698180_98699046
Length = 867
Score = 895 bits (463), Expect = 0.0
Identities = 466/467 (99%), Gaps = 1/467 (0%)
Strand = Plus / Plus
Query: 1 taaaatcttgaatctattgacggagttttttttcacacccaggttcctttggttgctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaatcttgaatctattgacggagttttttttcacacccaggttcctttggttgctgtt 260
Query: 61 ggtgtgcatagtcctggtaagcaaggagaagaactggagactcatgtacagagcaatccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtgcatagtcctggtaagcaaggagaagaactggagactcatgtacagagcaatccc 320
Query: 121 tgtgatctgggagcaagggcatgcttcctaacaatatcataccatcttgacaaacattta 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgatctgggagcaagg-catgcttcctaacaatatcataccatcttgacaaacattta 379
Query: 181 agcctctctttatttgcttggtcacctgcagtttgttgaatttctatagctggtagtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcctctctttatttgcttggtcacctgcagtttgttgaatttctatagctggtagtgag 439
Query: 241 atcactggaatatcagtgcactagaagaactgagataggaccctggaagtgtttggcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atcactggaatatcagtgcactagaagaactgagataggaccctggaagtgtttggcaga 499
Query: 301 gagctccgaggcaggagatgttgtgatgggaaccaatgctgttggaatccaggatttcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagctccgaggcaggagatgttgtgatgggaaccaatgctgttggaatccaggatttcca 559
Query: 361 aggacatctggacccacaagactgaacaaccctagggtagagaacacagcttcttgtcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggacatctggacccacaagactgaacaaccctagggtagagaacacagcttcttgtcat 619
Query: 421 gcttatggtcttcccgtggtcttatttaggaagtcaaaagtcatttt 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcttatggtcttcccgtggtcttatttaggaagtcaaaagtcatttt 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space: 392506
Effective search space used: 392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_k16.g1 MSMg01no472_k16.g1 CHROMAT_FILE:
MSMg01no472_k16.g1 PHD_FILE: MSMg01no472_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:23 2005
(481 letters)
>mm_chr8_98873282_98874163
Length = 882
Score = 851 bits (440), Expect = 0.0
Identities = 471/487 (96%), Gaps = 11/487 (2%)
Strand = Plus / Minus
Query: 1 tacttgataatctattttccactcccctcttctcctgatagctattgcaagagcaattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tacttgataatctattttccactcccctcttctcctgatagctattgcaagagcaattta 623
Query: 61 ctttgtgcttagactgatttaggaatacagggacaggggccattttctgtgacaca-ttt 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 622 ctttgtgcttagactgatttaggaatacagggacaggggccattttctgtgacacatttt 563
Query: 120 tttttcctggtctatagaaaggccttaacaaagacattcagggtttataggatcaccagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttttcctggtctatagaaaggccttaacaaagacattcagggtttataggatcaccagc 503
Query: 180 tttgatgccaatttgcatgtgaccatcagacaccaaccaatgaagctacgtttgggtctt 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 502 tttgatgccaatttgcatgtgaccatcagacaccaaccaatgaaactacgtttgggtctt 443
Query: 240 cc-----tttttggcaggatggacgctaagtcatcaataactggcaacagtgacaggaca 294
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cccggca-----ggcaggatggacgctaagtcatcaataactggcaacagtgacaggaca 388
Query: 295 acacagccatctgatgagaactcgatggaacttgtcactagaaagggcttatctccactg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acacagccatctgatgagaactcgatggaacttgtcactagaaagggcttatctccactg 328
Query: 355 aacagctgtgatgctcccttgtaaaatatgcctttgtggggaaaagtagtagtgtctact 414
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 327 aacagctgtgatgctcccttgtaaaatatgccttcgtggggaaaagtagtagtgtctact 268
Query: 415 tgtttaattgatgggagtccgcacattccaattttatctggacaaaacattttgaanagg 474
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 267 tgtttaattgatgggagtccgtgcattccaattttatctggacaaaacattttgaaaagg 208
Query: 475 aaattgg 481
|||||||
Sbjct: 207 aaattgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space: 410712
Effective search space used: 410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
