Query= MSMg01no473_m22.b1 MSMg01no473_m22.b1 CHROMAT_FILE:
MSMg01no473_m22.b1 PHD_FILE: MSMg01no473_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:02 2005
(455 letters)
>mm_chr8_29034076_29034929
Length = 854
Score = 735 bits (380), Expect = 0.0
Identities = 434/452 (96%), Gaps = 3/452 (0%)
Strand = Plus / Minus
Query: 5 gaattcacaataatatttccaccccaaacttttaagtgctagactacagaaatgttttcc 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 654 gaattcacaataatatttccaccccaaacttttaagtgctagactacagaaatg-tttcc 596
Query: 65 catccttggatacttttaaaatggtgcaaggattaagtttaaggctttgcgtatctttga 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 595 catccttggatacttttaaaatggtgcaaggattaagtttaaggcattgcgtatctttga 536
Query: 125 caaaccctgaactaataattaaccacactatttatcttttactttaaaaaagaaaatgaa 184
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct: 535 caaaccctgaactaataaggaaccagactatttatcttttactttaaaaaagaaaaagaa 476
Query: 185 aaatataaataggagactttctaaacctcatagtcagagaacaaagaagtggttgggaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaatataaataggagactttctaaacctcatagtcagagaacaaagaagtggttgggaaa 416
Query: 245 tatgttagccacttcacaatagaattgagtatcaatctttagcataaaactccttaaccc 304
|||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 415 tatgttagccacttcacagtagaattgagtatcactctttaacataaaactccttaaccc 356
Query: 305 actgtcagctgggctactagactggatgtagttgatatggggagaatggggtacttgatc 364
|||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 355 actgtcagctgggctaatagactggatgttgttgatatggggagagtggggtacttgatc 296
Query: 365 cagggttgatgccaggagttgggaataacagaagcttgaagtcacaaaaaactttc-act 423
||||||||||| ||||| |||||| ||||||||||| ||||||||||||||| ||| |||
Sbjct: 295 cagggttgatgtcaggaattggga-taacagaagctcgaagtcacaaaaaaccttccact 237
Query: 424 gagttagtggctctgggttcccatcttgaaaa 455
||||||||||||||||||||||||||||||||
Sbjct: 236 gagttagtggctctgggttcccatcttgaaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 854
Length adjustment: 10
Effective length of query: 445
Effective length of database: 844
Effective search space: 375580
Effective search space used: 375580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_m22.g1 MSMg01no473_m22.g1 CHROMAT_FILE:
MSMg01no473_m22.g1 PHD_FILE: MSMg01no473_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:02 2005
(397 letters)
>mm_chr8_28957367_28958163
Length = 797
Score = 640 bits (331), Expect = 0.0
Identities = 375/397 (94%), Gaps = 12/397 (3%)
Strand = Plus / Plus
Query: 1 tagattctcgaagatatgtgcaaagtgtttcaggaagatattctaatttagcttcctaca 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagattctcgaagatatgtgtaaagtgtttcaggaagatattctaatttagcttcctaca 260
Query: 61 tgtactcacactattttgcagtcatacccctcacacaaacacacacaggtacacacacac 120
||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 261 tgtgctcacaatattttgcagtcacacccctcacacaaacacacacaggtaaacacacac 320
Query: 121 ctacagcgcattggtgatgtggtgtggtgttgaaagtaagatagaaacagatggctgaga 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ctacagtgcattggtgatgtggtgtggtgttgaaagtaagatagaaacagatggctgcga 380
Query: 181 gagaattgaacaaaaagtagtcagtgatcaactggaaggaggggaaacaggagagcaaga 240
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 gagaattgaacaaaaagtagtcagtgatcaactggaaggag------------agcaaga 428
Query: 241 ctgtcaaatagctcagagatgtaaggtctttttaagagtaaacccaagtaaaggatagtt 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctgtcaaatagctcagagatataaggtctttttaagagtaaacccaagtaaaggatagtt 488
Query: 301 catctagtcagacaaataaaaatacttttatttgtgaactaatttaatttgaggacaaca 360
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 489 catctagtcagacgaataaaaatccttttatttgtgaactaatttaatttgaggacaaca 548
Query: 361 aaggtaagcttttctattctggttcacaggcagtgtg 397
|||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaggtaagcttttctattctggttcacaggcagtgtg 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
