BAC Information

Click to search

BAC

Clone NameMSMg01-473N08
Chromosome8 (Build37)
Map Location 18,851,799 - 18,852,324
singlet/doubletsinglet
Overlap geneAgpat5
Upstream geneLOC665638, LOC100040466, Mcph1, Angpt2
Downstream geneLOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473N08.T7 (MSMg01no473_n08.b1)MSMg01-473N08.TJ (MSMg01no473_n08.g1)
ACCAG556039AG556040
length767781
length of high quality
(start - end)
523 (73 - 595)494 (73 - 566)
definitionCHROMAT_FILE: MSMg01no473_n08.b1 PHD_FILE: MSMg01no473_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:04 2005CHROMAT_FILE: MSMg01no473_n08.g1 PHD_FILE: MSMg01no473_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAAAATCCGCGGAA
TTCTTCCCACACTTTCACCAGATATTCACTGGAACCCACTATCGGTGATC
TTTTTAAAAAAATCTTAATTGTTTATGTGTTCAGTTTTGTTCCTTTTTGC
TTATTTATCATCTTTGCGATTCTTTCAAACCCCAAATGACTTGCTTTGCT
TAGCTGGGAGCTGCAGAACTGTGGACTTGGGTGTGCCTCTGCTTAAGCCG
AATATTTTAACCTTTGATTCAGGAAATTGTTTCCCAGGTGTAGTTCTAGT
CTAACACAGCTTAATCTGCTAGGTANTGGCTATCGAGAGATTTACAAGAC
AATTTTTGAAAAATATGGTTAAGATTTTATTTCAATATCTTTTGTAAACA
TAAAACAAACTTGGCATTTAGTGTTTCATTTTTGAAGTCTCTTGTAAAAC
AATGTTGTTTACTCTTTGAGAATTTTCTAGATTTTGACCATATTCTTTTT
CCTCCCGCAGTTCTTCCACATCTTCTGCCTGTGTAGTTTTATTGTTGTTA
CTGTTTTACTTTTTTATTGATTCTTTGTGAATTTCACATCATGCACTCCA
ATCCCACTCATCTTCCCAGACTTCTGTATCTGCCCTTCTGCAATGGGAAC
AAAAAATATTTACCTTTATTTGATACCAAACTTAAACCGATCTGTGGACA
CTGCGGTTTGTCCTGGTGTGTTTCCCACTTCATCCCTTATCTCAAACTCT
TTAACTTGGTAATGTCC
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAACTGAGGAATACTGAATGGCTTAGA
AGCACCTAAAAACATGTTCAACATCCTTAGTCATCAAGGAAATGCAAATC
AAAACAACCCTGAGATTCCTTCTCATAGGAGTCAGTATGGCTAAAATCAA
AAACTCAGGTGACAGCAGATGCTGACGAGGATATGAAGAAAGAGGAACAC
TCCTCCATTGCTGGTGGGATTGCAAGCTAGTACAACCACTCAAGAAATCA
GTTTGGTGGTTCCTCAGAAAAATTGTACATTATACTTACTGGAAGATCCA
GCAATACCACCTCAGGCATATATCCAGAAGATGCTCCAACTTGTAATAAG
AACACATGCTCCACTATGTTCATAGCAGCCTTATGTATAATAGCCAGAAG
CTGGAAAGAGCCCAGATGTCCCTCAATAGTGGAATGGATACAGAAAATGT
GGTACATTGGAGTACTATGTGTAACCTCCCCCAGCCTGAAACAGGATGAT
CCAGACCTTGACCTTGCTGCCACTAAGGAGATTACCTAGGGTGGAGCCTT
CCTGCCTAGATAGCTCTATTGTTCTGCCACCTGCCACTGTTGCTCCAAGA
CACTGCTACCTGCTGAGAGGCCCCTGAGATATTCCAGAGGAACATCCTAT
CCTTGCCACTGATTGGTTCCAGACACCAAAAAAGTATCGGCGTGGGGGGG
GGGGGTTTTTTCACTTTTTTTCTATCTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_n08.b1 MSMg01no473_n08.b1 CHROMAT_FILE:
MSMg01no473_n08.b1 PHD_FILE: MSMg01no473_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:04 2005
         (523 letters)



>mm_chr8_18851599_18852524
          Length = 926

 Score =  920 bits (476), Expect = 0.0
 Identities = 513/532 (96%), Gaps = 15/532 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattcactggaacccactatcggtgatctttttaaaaaaatcttaattgtttatgtgttc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattcattggaacccactatcggtgatctttttaaaaaaatcttaattgtttatgtgttc 260

                                                                       
Query: 61  agttttgttcctttttgcttatttatcatctttgcgattctttcaaaccccaaatgactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttttgttcctttttgcttatttatcatctttgcgattctttcaaaccccaaatgactt 320

                                                                       
Query: 121 gctttgcttagctgggagctgcagaactgtggacttgggtgtgcctctgcttaagccgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttgcttagctgggagctgcagaactgtggacttgggtgtgcctctgcttaagccgaa 380

                                                                       
Query: 181 t-----attttaacctttgattcaggaaattgtttcccaggtgtagttctagtctaacac 235
           |     |    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagcaa----aacctttgattcaggaaattgtttcccaggtgtagttctagtctaacac 436

                                                                       
Query: 236 agctt-aatctgctagg---tantggctatcgagagatttacaagacaatttttgaaaaa 291
           ||||| |||||||||||   |  |||||| ||||||||||||||||||||||||||||||
Sbjct: 437 agcttaaatctgctaggaaat--tggctagcgagagatttacaagacaatttttgaaaaa 494

                                                                       
Query: 292 tatggttaagattttatttcaatatcttttgtaaacataaaacaaacttggcatttagtg 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tatggttaagattttatttcaatatcttttgtaaacataaaacaaacttggcatttagtg 554

                                                                       
Query: 352 tttcatttttgaagtctcttgtaaaacaatgttgtttactctttgagaattttctagatt 411
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 555 tttaatttttgaagtctcttgtaaaacaatgttgtttactctttgagaattttctatatt 614

                                                                       
Query: 412 ttgaccatattctttttcctcccgcagttcttccacatcttctgcctgtgtagttttatt 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttgaccatattctttttcctcccgcagttcttccacatcttctgcctgtgtagttttatt 674

                                                               
Query: 472 gttgttactgttttacttttttattgattctttgtgaatttcacatcatgca 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gttgttactgttttacttttttattgattctttgtgaatttcacatcatgca 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 926
Length adjustment: 10
Effective length of query: 513
Effective length of database: 916
Effective search space:   469908
Effective search space used:   469908
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)