Query= MSMg01no473_n23.b1 MSMg01no473_n23.b1 CHROMAT_FILE:
MSMg01no473_n23.b1 PHD_FILE: MSMg01no473_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:07 2005
(503 letters)
>mm_chr8_81705492_81706394
Length = 903
Score = 920 bits (476), Expect = 0.0
Identities = 495/510 (97%), Gaps = 15/510 (2%)
Strand = Plus / Plus
Query: 1 tttgatcatattcacacacacacacaccccaaacccttccagatctaccttccccctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgatcatattcacacacacacacaccccaaacccttccagatctaccttccccctttc 260
Query: 61 ttacctgcctacctttgtgtccttattttgacacagctcaggaaaatcctagactctaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacctgcctacctttgtgtccttattttgacacagctcaggaaaatcctagactctaat 320
Query: 121 acacaggtgaatagtcatgtttcagtaaaatgatttacaagagcaggatgctagtgtgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacaggtgaatagtcatgtttcagtaaaatgatttacaagagcaggatgctagtgtgag 380
Query: 181 tccatgggctatcatttgctgacccctgtggccccgagagtttcccgtggactactgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatgggctatcatttgctgacccctgtggccccgagagtttcccgtggactactgctt 440
Query: 241 ttagaggtttg-------tttcttttttgtactaacctagatctgcgcattagtaagttc 293
||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 441 ttagaggtttggccacagtt--------gtactaacctagatctgcgcattagtaagttc 492
Query: 294 aattgctaggaaggtatttaagccaacattcatactacatgacctacagtccagtatctt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aattgctaggaaggtatttaagccaacattcatactacatgacctacagtccagtatctt 552
Query: 354 tcctcacgactgtactacttcccagcagaagcccagtggcacactgccaccttcccctaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tcctcacgactgtactacttcccagcagaagcccagtggcacactgccaccttcccctaa 612
Query: 414 tggcctctctggtggttttggacttctcctcacagaggggctctaagcctgttagttggt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tggcctctctggtggttttggacttctcctcacagaggggctctaagcctgttagttggt 672
Query: 474 ggtaagcaccaatactttgattatcctaca 503
||||||||||||||||||||||||||||||
Sbjct: 673 ggtaagcaccaatactttgattatcctaca 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_n23.g1 MSMg01no473_n23.g1 CHROMAT_FILE:
MSMg01no473_n23.g1 PHD_FILE: MSMg01no473_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:07 2005
(501 letters)
>mm_chr8_81900442_81901342
Length = 901
Score = 491 bits (254), Expect = e-143
Identities = 356/432 (82%), Gaps = 67/432 (15%)
Strand = Plus / Minus
Query: 1 aaggcattgattgggagactgcgttttggtggtgtttacacagttaggtaatttcctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 368 aaggcattgattgggagactgcgttttggtggtgtttacacagttaggtaatttcgtgtt 309
Query: 61 tctttacgagatgagacacagataagaaaatgtccatggtgcagttggctgatttagttt 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tctttacgagatgagacgcagataagaaaatgtccatggtgcagttggctgatttagttt 249
Query: 121 cctctgacacaaagcaaattacacagcaattaaaagtatttaaatcaacgggcagtggtg 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 248 cctctgacacaaagcaaattacgcagcaattaaaagtatttaaatcaacgggcagtggtg 189
Query: 181 gtcccagcacttgggaggcagaggcagaggcagaggcagaggcagaggcagaggcagagg 240
|||||||||||||
Sbjct: 188 gtcccagcacttg----------------------------------------------- 176
Query: 241 cagaggcagaggcagaggcagaggcagaggcaggcggatttcagagtttgaggccaacct 300
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 175 -------------agaggcagaggcagaggcaggcggatttcagagtttgaggccagcct 129
Query: 301 ggtcttcagagtaagtaccaggacagccagggctacacagagaaaccctgtctcgaaaaa 360
||||| |||||| ||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 128 ggtctacagagtgagttctaggacagccaaggctacacagagaaaccctgtctcgaaaaa 69
Query: 361 ccttaaaaaaaaaaaaa---aaaagaaagaaagaaagaaagaaaaagtatttaaatccca 417
||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 68 ccttaaaaaaaaaaaaaaagaaaagaa--aaagaaagaaag--aaagtatttaaatccca 13
Query: 418 cttcttctaaca 429
||||||||||||
Sbjct: 12 cttcttctaaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
