BAC Information

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BAC

Clone NameMSMg01-473N24
Chromosome8 (Build37)
Map Location 79,133,788 - 79,307,372
singlet/doubletdoublet
Overlap geneLOC100039211
Upstream gene1700007B14Rik, LOC666036, LOC100039185, EG631594, LOC666226
Downstream geneLOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473N24.T7 (MSMg01no473_n24.b1)MSMg01-473N24.TJ (MSMg01no473_n24.g1)
ACCAG556071AG556072
length766765
length of high quality
(start - end)		499 (50 - 548)517 (78 - 594)
definitionCHROMAT_FILE: MSMg01no473_n24.b1 PHD_FILE: MSMg01no473_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:08 2005CHROMAT_FILE: MSMg01no473_n24.g1 PHD_FILE: MSMg01no473_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,133,788 - 79,134,283)(79,306,927 - 79,307,372)
sequence
NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTATTTGTTTCCTAGATTAGTTATGATAATGACCATACGT
AAATAGTAAAAACCTCAAACAGTGGTGCTTTAAATACACTTGAAGTTTAC
TTGTTTTTAGGAAGAACTTGAAAGACAAACAATTCAAGAGATTGTTTTGT
ATCAACATTCTTAGGGAACCTAGGTCTTCACCAGCTCTCTGCCCTAGTGT
CCCCTGGGTGTGGTTGTCACTTAGGCAGAAGGAAGGGTTGAGAAGGATCA
ATGGCTCCGTGCAAACTGAAGGATCCTGAAATGTCACAGGACATTTGTAG
GATGTCCCATGTCTGCTCCACAAGAGGGCTTGGGCTGCTTGGAGAGGCAG
GAGGTAGGAGGCAGAAGGCAGGAAGTGGAGTATGACTGAGATTACCCCAA
ACTGGCTCCCAGAGGGTGTCAGGCTATATTGGAAGCTGCTCCGGGGATGG
GGGAGCACAGTCTGAGGTCCCAGGGACTGCCAGAGCTGGCTCCAGGTCCC
AGGTCTGCAAGGAGGCCAGTGTCCCAGTGTCATCTGTTCTCAAGCTCTAT
AGCACCAGGCACCACTGGATCCGGGNGGAAAGAGTTCTTCCTTTGTCTCA
AGCACTGGTCTGGTGTGTGGTTTATTGGTTGTGGATATTAAAATCCTTTT
ATATGGAAATAAAGGGTTGAGTCTTTAAAGATATGATCGGCCCTTTGGCC
CTCCTTTTTTCTTCTA

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATTCTAAGCAAAAGATTCTT
AATGAAATACTCTGCAGGAAGGAGAAGGACAGCCTTGTTCATGTGGGTAT
ATGGAAGCATACACTTTATGAAAACAACTGATACACAAACTAGTATGGGA
ACAGAAACAACCATTTCTCAAATAGCAACTCGGGAAACCCTCAATACTGT
AGAAGGGAAAGAAATACAAATAGTTCAGCAAGACAGAGCATGGCATAATA
CATCCCAGCAAACAGTGAACTACTTTCTGTAATAATCTTAAATGTAAAAG
GCTTCAAATGCCACTAAAAGGAGACAGACTGGATTAAACATCAAGGATCA
ACAACTATATGTTGTCTTCAAGAAACACACTATCAATAAAGATATCCAAA
AGCTTAGTATCCAAAGGTAGAAAACAACCAACCAAGGAAATGAAAAATGC
AAACAAGCAAGTGTTGCTAGCTTTATAGCAGACAAAATAAACCAAAAAAA
AACCAAATTAGAAGAGATAAAATGGGATACTACCTATTATCAAAAGGAAC
AATAAATCAAGAACATGTAACAACTGTAAACATTCACGCATTGAATGAGC
CCCTATTTTCATCTNAAAAAAGAAAAATTAAAAACTAAAAGAGAACACAG
GCCCATATGTTCTGACACATAATAATGTGGGTGAGTTCAAATTTCCCTCA
TACCCAACATAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_n24.b1 MSMg01no473_n24.b1 CHROMAT_FILE:
MSMg01no473_n24.b1 PHD_FILE: MSMg01no473_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:08 2005
         (499 letters)



>mm_chr8_79133585_79134483
          Length = 899

 Score =  897 bits (464), Expect = 0.0
 Identities = 488/496 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactatttgtttcctagattagttatgataatgaccatacgtaaatagtaaaaa 63
           ||||||||||||||| || ||| |||| ||||||||||||||| | ||||||||||||||
Sbjct: 204 ggaattcactatttgcttactaaattaattatgataatgaccacatgtaaatagtaaaaa 263

                                                                       
Query: 64  cctcaaacagtggtgctttaaatacacttgaagtttacttgtttttaggaagaacttgaa 123
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 cctcaaacagtggtgctttaaatacacttgacgtttacttgtttttaggaagaacttgaa 323

                                                                       
Query: 124 agacaaacaattcaagagattgttttgtatcaacattcttagggaacctaggtcttcacc 183
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agacaaacaattcaagagagtgttttgtatcaacattcttagggaacctaggtcttcacc 383

                                                                       
Query: 184 agctctctgccctagtgtcccctgggtgtggttgtcacttaggcagaaggaagggttgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agctctctgccctagtgtcccctgggtgtggttgtcacttaggcagaaggaagggttgag 443

                                                                       
Query: 244 aaggatcaatggctccgtgcaaactgaaggatcctgaaatgtcacaggacatttgtagga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaggatcaatggctccgtgcaaactgaaggatcctgaaatgtcacaggacatttgtagga 503

                                                                       
Query: 304 tgtcccatgtctgctccacaagagggcttgggctgcttggagaggcaggaggtaggaggc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtcccatgtctgctccacaagagggcttgggctgcttggagaggcaggaggtaggaggc 563

                                                                       
Query: 364 agaaggcaggaagtggagtatgactgagattaccccaaactggctcccagagggtgtcag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaaggcaggaagtggagtatgactgagattaccccaaactggctcccagagggtgtcag 623

                                                                       
Query: 424 gctatattggaagctgctccggggatgggggagcacagtctgaggtcccagggactgcca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctatattggaagctgctccggggatgggggagcacagtctgaggtcccagggactgcca 683

                           
Query: 484 gagctggctccaggtc 499
           ||||||||||||||||
Sbjct: 684 gagctggctccaggtc 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no473_n24.g1 MSMg01no473_n24.g1 CHROMAT_FILE:
MSMg01no473_n24.g1 PHD_FILE: MSMg01no473_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:08 2005
         (517 letters)



>mm_chr8_79306927_79307843
          Length = 917

 Score =  855 bits (442), Expect = 0.0
 Identities = 445/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaattctaagcaaaagattcttaatgaaatactctgcaggaaggagaaggacagccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttaattctaagcaaaagattcttaatgaaatactctgcaggaaggagaaggacagccttg 387

                                                                       
Query: 61  ttcatgtgggtatatggaagcatacactttatgaaaacaactgatacacaaactagtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttcatgtgggtatatggaagcatacactttatgaaaacaactgatacacaaactagtatg 327

                                                                       
Query: 121 ggaacagaaacaaccatttctcaaatagcaactcgggaaaccctcaatactgtagaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggaacagaaacaaccatttctcaaatagcaactcgggaaaccctcaatactgtagaaggg 267

                                                                       
Query: 181 aaagaaatacaaatagttcagcaagacagagcatggcataatacatcccagcaaacagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaagaaatacaaatagttcagcaagacagagcatggcataatacatcccagcaaacagtg 207

                                                                       
Query: 241 aactactttctgtaataatcttaaatgtaaaaggcttcaaatgccactaaaaggagacag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 206 aactactttctgtaataatcttaaatgtaaaaggcttcaaatgccactaaaaagagacag 147

                                                                       
Query: 301 actggattaaacatcaaggatcaacaactatatgttgtcttcaagaaacacactatcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 actggattaaacatcaaggatcaacaactatatgttgtcttcaagaaacacactatcaat 87

                                                                       
Query: 361 aaagatatccaaaagcttagtatccaaaggtagaaaacaaccaaccaaggaaatgaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  aaagatatccaaaagcttagtatccaaaggtagaaaacaaccaaccaaggaaatgaaaaa 27

                                     
Query: 421 tgcaaacaagcaagtgttgctagctt 446
           ||||||||||||||||||||||||||
Sbjct: 26  tgcaaacaagcaagtgttgctagctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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