BAC Information

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BAC

Clone NameMSMg01-474N20
Chromosome8 (Build37)
Map Location 99,130,669 - 99,131,146
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331, LOC546090, LOC636859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474N20.T7 (MSMg01no474_n20.b1)MSMg01-474N20.TJ (MSMg01no474_n20.g1)
ACCAG556825AG556826
length761748
length of high quality
(start - end)		481 (49 - 529)453 (75 - 527)
definitionCHROMAT_FILE: MSMg01no474_n20.b1 PHD_FILE: MSMg01no474_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:28 2005CHROMAT_FILE: MSMg01no474_n20.g1 PHD_FILE: MSMg01no474_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCTTGATTCGTGTGCCAAAAATAAATCCTTCTTCTTTTAAG
TGGTTGTTTTCCCATATTTTGTCACGGGGATGAGGGGGTTAACTAATGTG
AATGCCATCTTTTCTTCTAAAAATACTCCCAATAACACTTTGCATTTAAG
AGATAGAGATGAATTCTAGTTGCTTTCTAATATCTGCCCATGTCCTACTG
GTTTCAAATATCTACCTATATCCTACTGCTTTCAAATAGCTACCCATATG
CTGCTGCTTTCTAATATCTGTCTAATATATTGCTTTTAAAAATATCTGTC
CATATCCTACTGCTTTCAAATATCTGGCCATGTTCTACTGCTTTAAGTTT
TTCTATTTTAAGAACTCATTGCCAGTAATTACTTTCAGAACTTATATTGT
GTCTCACAGATCTGTGTTTTCTCATGCTTTGACCCTTGGGAAAACAGNTC
CTTCTCTGTTTCATCTCTTTAACACATGCTTTANGGCTGTTACTCGTTGT
CTAGTGTTGCACATCTTTCTGAAAGTTGGCTGGTTAAATTCCCTTCCACA
AGGTTTGTCTGGGTTTTCTCAATAAGATTTTGCTGAAAGAAAAGGTTGAA
GGAATATGCTTTCTACCTGGAAGGTTTTTAAAAAAATTTAACGGTGGGGT
GAAAACACCAAAATTGGTTTCATAAAACCTTAATTCCCCAAAGGGGGGGT
TTTTTCGGCCA

NCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGCTGGAGTCACCTCCAGAGACCA
TCTGGAGTCTCCCTGAATTCCATATTTCTGGCACATCTTAGAGATAGATG
CCCCTTAACCACCAATATCCCTTCTTTTTTTCCCTGTTCTCCCTACGTAT
GATCTTCCCTTTCCCTCTTCCCCATTCCTTCTTCCCCCCAGTTCTCTTCT
TTCATCAACCCCCAATATCTAATTTGTTTCACCTGAGAAAGATTCAACCA
TCCTCTCTTGGGCCCTCCATGTTATTGGGCTTCTTGGGTGTGTTGATTAT
AAATGGTTATCCTGTACTCTGTGGCGAATATCCACTTAAAAGTGAGTACA
TACCATGCATCCCATACTCCATCTGGATTTGGGTTTCCTCACTCAGGATG
ACATTTTCTAGTTCTATCCCTTTGCTTACAAACACGATGTCCTTGCTTTT
AATAGCTGAGTAGTATTCCATTCTGTAAATAGACCACATTTTCTTTATCT
ATTCTTCAGNTGAGGGACATCTAGATTGTTTCCAGTTTGGGGCTATTATG
AAAAAAGCTGCTATGAACATAGTTGAGCAAATGTTTTGTGGGATAAAAGA
GCATTTTGGGGCACATTAGTGGGGACACCTGGGTCCCCAGGGAATTACAA
ACTTCTTTAAAGGGCCAAAATGATTTTCAAAAGGTGAATAAAGGGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_n20.b1 MSMg01no474_n20.b1 CHROMAT_FILE:
MSMg01no474_n20.b1 PHD_FILE: MSMg01no474_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:28 2005
         (481 letters)



>mm_chr8_99130466_99131346
          Length = 881

 Score =  870 bits (450), Expect = 0.0
 Identities = 471/479 (98%), Gaps = 3/479 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccttga--ttcgtgtgccaaaaataaatccttcttcttttaagtggttgtttt 62
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctccttgaaatt-gtgtgccaaaaataaatccttcttcttttaagtggttgtttt 262

                                                                       
Query: 63  cccatattttgtcacggggatgagggggttaactaatgtgaatgccatcttttcttctaa 122
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263 cccatattttgtcacggggatgagggggttaattaatgtgaatgccatcttttcttctaa 322

                                                                       
Query: 123 aaatactcccaataacactttgcatttaagagatagagatgaattctagttgctttctaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaatactcccaataacactttgcatttaagagatagagatgaattctagttgctttctaa 382

                                                                       
Query: 183 tatctgcccatgtcctactggtttcaaatatctacctatatcctactgctttcaaatagc 242
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 tatctgcccatgtcctactggtttcaaatatctacccatatcctactgctttcaaatagc 442

                                                                       
Query: 243 tacccatatgctgctgctttctaatatctgtctaatatattgcttttaaaaatatctgtc 302
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tacccatatgctactgctttctaatatctgtctaatatattgcttttaaaaatatctgtc 502

                                                                       
Query: 303 catatcctactgctttcaaatatctggccatgttctactgctttaagtttttctatttta 362
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 503 catatcctactgctttcaaatatctggctatgttctactgctttaagtttttctatttta 562

                                                                       
Query: 363 agaactcattgccagtaattactttcagaacttatattgtgtctcacagatctgtgtttt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agaactcattgccagtaattactttcagaacttatattgtgtctcacagatctgtgtttt 622

                                                                      
Query: 423 ctcatgctttgacccttgggaaaacagntccttctctgtttcatctctttaacacatgc 481
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 623 ctcatgctttgacccttgggaaaacagttccttctctgtttcatctctttaacacatgc 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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