BAC Information

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BAC

Clone NameMSMg01-475B16
Chromosome8 (Build37)
Map Location 93,928,983 - 93,929,363
singlet/doubletsinglet
Overlap geneAJ237917
Upstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
Downstream geneLOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475B16.T7 (MSMg01no475_b16.b1)MSMg01-475B16.TJ (MSMg01no475_b16.g1)
ACCAG557009AG557010
length770774
length of high quality
(start - end)
296 (68 - 363)381 (78 - 458)
definitionCHROMAT_FILE: MSMg01no475_b16.b1 PHD_FILE: MSMg01no475_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:46 2005CHROMAT_FILE: MSMg01no475_b16.g1 PHD_FILE: MSMg01no475_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGT
CATTTTCAGTTAGAAGGTTTTAGGCTACCCTGAGCTCCATGAGATCCTGT
CTCAAAACAACAACACAACAAGTTAATCCTACGTCTTAGTTCCCTTTTAT
TATTTTAGTAATTAATGGATCAGTCTACCTTTCCTTTTTTTTCCTTTCCT
TTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCT
TTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCT
TTCCTTTCCTTTTCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCT
TTCCTTTCCTTTCCTCTTCTAAACTCATCTATTCTGCCATACCATGGGAC
AGGGCAGGGAGGCGTTGGACTGGAGAGGCGCTCTCTGTAACGCTAAGCTA
TATTGCCATGCATGACACTTTAAAACTGAAGTGCTGGGTTGTATCCAGAC
AAGCCTGGGATGGGATGGGATGGAATCAGAGCAGAGTATAGCAAAGTGAT
ATGACGGGGCGGGCCGAGCCGATCACATTTAGGTCCGGATCGGGGCCTAC
GCTAATACGATTGCGCGGGCAATGCTGTGAGCTGGGTCTCTGCGCTGTAC
TTTTTGTTTGGCTCGGCTGGTAACGCAAACAAGACTCCGCCCCTCTTTTC
TCTGTAGGGCTGCCGAGGGTCTGGCACAGCCTTTGTCCGTCGGTCGTTTT
CCTGCCTCGCGTTCTTCTTN
TTTTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAAATATGTCCATGTGTCCC
TCCTTGCTTTGTTTACTTTGCTGAGTCCCCCTCGTTTCTGAGGTAAAGTA
CAAACTCAGCGTGTCCACTTAACATTCACAAAACTATCGGTAGGTAGACC
CAGCCCTCTGGCCAGCCTCTTATCCCTCACCTACTGTGGATCTGACAGAC
ACCAGTGTCTGAGAGCACCTTGCTGTACTTTGACCCTGCCTGCCCTTCTT
CTACCAGGTGTCTGCCTCTATTCTCCTCCCCTCCACTGTTTACCCTAAGA
AAAATGCCCTTATGTAAATACTGTATATTCTGTTAATGTCCCAGGAAATC
CCACTGGTAAGGTGTCTCGTGACTGCTTTCTGTCCCTGTCGATTGCCCTG
GGGCCAAAGCTGCGGCGCTCTTGCTGTACCCATGTCCTGCTGTAGCTGCC
TTCCAGTTTCTCCACTTTTCCTTTGCTTCACCAGAACATACCTTTACACC
CTAAGACGGTTTCTCCTCTTTTTATTTTGCCTGAACGTTGCACCGTTGTC
TCGTCTCGCTGCCCCCTCCGTTCCTTTCTCCATTATTTCTCTCCTTCCCC
CTCGCCTTTTCCTCCCCTTTATTCTCCCTTTTCCTCTCTTCTATCCCTCC
CTCCTTTCCTTTTCTTCCTCCGCTTCCCCCTTTTTTTTCTCCTTTCCTCC
ACCCTTTCCTCCCCCTTTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_b16.g1 MSMg01no475_b16.g1 CHROMAT_FILE:
MSMg01no475_b16.g1 PHD_FILE: MSMg01no475_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:46 2005
         (381 letters)



>mm_chr8_93928783_93929563
          Length = 781

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaaatatgtccatgtgtccctccttgctttgtttactttgctgagtccccctcgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaaatatgtccatgtgtccctccttgctttgtttactttgctgagtccccctcgttt 260

                                                                       
Query: 61  ctgaggtaaagtacaaactcagcgtgtccacttaacattcacaaaactatcggtaggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaggtaaagtacaaactcagcgtgtccacttaacattcacaaaactatcggtaggtag 320

                                                                       
Query: 121 acccagccctctggccagcctcttatccctcacctactgtggatctgacagacaccagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccagccctctggccagcctcttatccctcacctactgtggatctgacagacaccagtg 380

                                                                       
Query: 181 tctgagagcaccttgctgtactttgaccctgcctgcccttcttctaccaggtgtctgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgagagcaccttgctgtactttgaccctgcctgcccttcttctaccaggtgtctgcct 440

                                                                       
Query: 241 ctattctcctcccctccactgtttaccctaagaaaaatgcccttatgtaaatactgtata 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaccctcctcccctccactgtttaccctaagaaaaatgcccttatgtaaatactgtata 500

                                                                       
Query: 301 ttctgttaatgtcccaggaaatcccactggtaaggtgtctcgtgactgctttctgtccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgttaatgtcccaggaaatcccactggtaaggtgtctcgtgactgctttctgtccct 560

                                
Query: 361 gtcgattgccctggggccaaa 381
           | |||||||||||||||||||
Sbjct: 561 gccgattgccctggggccaaa 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)